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Anatomy & Physiology Chapter 2 & 3 Key Concepts

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  • Matter

    Matter is anything that occupies space and has mass. It exists in three states: solid (has shape and volume), liquid (definite volume but shape conforms to container), and gas (neither shape nor definite volume).

  • Energy

    Energy is the capacity to do work or move matter. It has no mass or volume but can be measured by its effects. Forms include chemical, electrical, mechanical, and radiant energy.

  • ATP (Adenosine Triphosphate)

    ATP is the primary energy-transferring molecule in cells, providing immediately usable energy for cellular functions. It consists of an adenine-containing nucleotide plus three phosphate groups.

  • Atom Structure

    An atom consists of a dense nucleus containing protons (positive charge) and neutrons (neutral), surrounded by electrons (negative charge) orbiting in shells. Atoms are electrically neutral overall.

  • Isotopes

    Isotopes are different atomic forms of the same element that vary in neutron number. Some isotopes are radioactive and decay over time.

  • Molecule vs Compound

    A molecule is two or more atoms bonded together. A compound is a molecule made of different kinds of atoms chemically bonded.

  • Mixtures

    Mixtures are physical combinations of substances without chemical bonding. Types include solutions (homogeneous), colloids (heterogeneous, scatter light), and suspensions (large particles, settle out).

  • Ionic Bond

    An ionic bond forms when electrons are transferred from one atom to another, creating oppositely charged ions that attract each other.

  • Covalent Bond

    A covalent bond forms when atoms share electrons. Single, double, or triple bonds depend on the number of shared electron pairs.

  • Polar vs Nonpolar Molecules

    Polar molecules have unequal electron sharing, creating partial charges. Nonpolar molecules share electrons equally and have no charge poles.

  • Hydrogen Bond

    Hydrogen bonds are weak attractions between a hydrogen atom covalently bonded to an electronegative atom and another electronegative atom, important in water properties and biomolecule structure.

  • Chemical Reaction Types

    Three main types: synthesis (building larger molecules), decomposition (breaking molecules down), and exchange (both making and breaking bonds). Redox reactions involve electron transfer.

  • Water Importance

    Water maintains homeostasis by distributing heat, acts as a solvent, and participates in cooling via sweating. It is essential for life and must be replenished regularly.

  • Acids and Bases

    Acids release hydrogen ions and are proton donors; bases release hydroxyl ions and are proton acceptors. Both conduct electricity and affect pH balance.

  • pH Scale

    The pH scale ranges from 0 to 14: 7 is neutral, below 7 is acidic, above 7 is basic. Blood pH is tightly regulated between 7.35 and 7.45.

  • Buffers

    Buffers resist changes in pH by releasing or absorbing hydrogen ions. The lungs and kidneys are key physiological buffers maintaining blood pH.

  • Macromolecules

    Macromolecules are large complex molecules formed by joining monomers into polymers, including carbohydrates, lipids, proteins, and nucleic acids.

  • Dehydration Synthesis vs Hydrolysis

    Dehydration synthesis joins monomers by removing water. Hydrolysis breaks bonds by adding water, releasing monomers.

  • Lipids

    Lipids are hydrophobic molecules including triglycerides (energy storage), phospholipids (cell membranes), and steroids (cholesterol and hormones).

  • Protein Structure Levels

    Proteins have four structure levels: primary (amino acid sequence), secondary (alpha-helix or beta-sheet), tertiary (3D folding), and quaternary (multiple polypeptides combined).

  • Enzymes

    Enzymes are globular proteins that catalyze biochemical reactions by lowering activation energy without being consumed.

  • DNA vs RNA

    DNA stores genetic information in the nucleus as a double helix with deoxyribose sugar and bases A, T, C, G. RNA is single-stranded, contains ribose sugar, and uses uracil instead of thymine.

  • Nucleotides

    Nucleotides are the building blocks of nucleic acids, composed of a pentose sugar, nitrogenous base, and phosphate group.

  • Complementary Base Pairing

    In DNA, adenine pairs with thymine, and guanine pairs with cytosine. In RNA, uracil replaces thymine pairing with adenine.

  • Cell Theory

    Cell theory states all living things are made of cells, cells are the smallest unit of life, and all cells arise from preexisting cells.

  • Plasma Membrane Structure

    The plasma membrane is a phospholipid bilayer with embedded proteins, cholesterol, and carbohydrates forming a fluid mosaic that controls selective permeability.

  • Types of Cell Junctions

    Tight junctions seal cells to prevent leakage, desmosomes anchor cells mechanically, and gap junctions allow communication via channels.

  • Passive vs Active Transport

    Passive transport moves substances down concentration gradients without energy. Active transport requires ATP to move substances against gradients.

  • Vesicular Transport

    Vesicular transport moves large substances via membrane-bound vesicles using energy, including exocytosis (out), endocytosis (in), and transcytosis (through cells).

  • Lysosomes

    Lysosomes are membrane-bound organelles containing digestive enzymes that break down waste, damaged organelles, and pathogens.

  • Cytoskeleton Components

    The cytoskeleton includes microfilaments (actin), intermediate filaments (tension resistance), and microtubules (organelle movement and shape).

  • Cell Cycle Phases

    The cell cycle includes interphase (G1, S, G2 phases for growth and DNA replication) and mitotic phase (mitosis and cytokinesis for cell division).

  • DNA Replication

    DNA replication involves uncoiling, strand separation, complementary base assembly by DNA polymerase, and strand restoration by DNA ligase, producing two identical DNA molecules.

  • Protein Synthesis Steps

    Protein synthesis includes transcription (DNA to mRNA in nucleus) and translation (mRNA decoded to protein at ribosomes in cytoplasm).

  • Transcription

    Transcription is the process where RNA polymerase builds mRNA from a DNA template, including initiation, elongation, and termination phases.

  • Translation

    Translation is decoding mRNA into a polypeptide chain at ribosomes, involving initiation, elongation, and termination steps with tRNA delivering amino acids.