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Microbiology: Bacterial and Archaeal Growth

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  • Binary fission

    Binary fission is the primary asexual reproductive method in bacteria and archaea, involving replication of the single circular chromosome and division into two daughter cells.

  • Phases of bacterial cell cycle

    Three phases: 1) Growth after cell birth, 2) Chromosome replication and partitioning, 3) Cytokinesis with septum formation.

  • Replisome

    The DNA synthesis machinery that copies the double-stranded circular chromosome during replication.

  • Z-ring and FtsZ protein

    The Z-ring is formed by polymerization of FtsZ protein at the future division site, initiating cytokinesis and septum formation.

  • Min system and nucleoid occlusion

    The Min system prevents Z-ring formation at cell poles, while nucleoid occlusion prevents Z-ring formation over unsegregated chromosomes.

  • Divisome

    A protein complex anchored by FtsA and ZipA that synthesizes and remodels the cell wall during division.

  • Peptidoglycan synthesis steps

    1) NAG-NAM-pentapeptide synthesized on bactoprenol, 2) MurJ flips it across membrane, 3) Glycosyltransferases insert it into peptidoglycan, crosslinked by transpeptidases.

  • Cell shape determination in cocci

    Peptidoglycan synthesis occurs only at the central septum, guided by FtsZ localization.

  • Cell shape determination in rod-shaped bacteria

    Elongasome complex with MreB scaffold directs peptidoglycan synthesis along the sidewall; MreB depletion leads to spherical shape.

  • Cell shape determination in curved (vibroid) bacteria

    Crescentin protein localizes asymmetrically, causing curved cell shape by uneven cell wall synthesis.

  • Archaeal cell cycle

    Similar to eukaryotic mitotic cycle with G1, S, G2 phases, chromosome segregation, and cytokinesis, but with a single circular chromosome.

  • Microbial growth curve phases

    Lag phase, exponential (log) phase, stationary phase, death phase, and long-term stationary phase.

  • Lag phase

    Cells synthesize new components to adapt to new conditions before starting division.

  • Exponential phase

    Cells divide at a constant maximal rate; population is most uniform chemically and physically.

  • Stationary phase

    Growth ceases due to nutrient limitation or waste accumulation; cell division balances cell death.

  • Death phase

    Viable cell number declines exponentially due to nutrient deprivation and toxic waste buildup.

  • Generation time (doubling time)

    Time required for a microbial population to double in size; varies by species and environment.

  • Growth rate constant (k)

    Number of generations per unit time; related to generation time by \(g=\frac{1}{k}\).

  • Environmental factors affecting microbial growth

    Include osmotic pressure, pH, temperature, oxygen concentration, pressure, and radiation.

  • Oxygen relationships of microbes

    Obligate aerobes, obligate anaerobes, microaerophiles, facultative anaerobes, and aerotolerant anaerobes.

  • Reactive oxygen species (ROS) defense enzymes

    Superoxide dismutase, catalase, and peroxidase protect aerobes from toxic oxygen derivatives.

  • Biofilms

    Surface-attached microbial communities embedded in extracellular polymeric substances, providing protection and complex interactions.

  • Quorum sensing

    Cell-cell communication mechanism where bacteria detect population density via signaling molecules to regulate gene expression.

  • Culture media types

    Defined (synthetic), complex, supportive, enriched, selective, and differential media used to grow and isolate microbes.

  • Isolation of pure cultures

    Techniques like streak plate, spread plate, and pour plate separate individual cells to obtain pure microbial cultures.

  • Direct cell counting methods

    Counting chambers, membrane filter technique, flow cytometry, and electronic counters measure microbial population size.

  • Viable counting methods

    Standard plate counts and membrane filter methods count colony-forming units (CFUs) to estimate viable cells.

  • Continuous culture systems

    Chemostats and turbidostats maintain microbial populations in exponential growth by controlling nutrient supply and waste removal.