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Microbiology: Genetics, Protein Synthesis, Mutation, and Staining

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  • What is the central dogma of molecular biology?

    The flow of genetic material from DNA to RNA to protein.

  • How does RNA structurally differ from DNA?

    RNA has a ribose sugar (with 2' OH), uses uracil instead of thymine, and is usually single-stranded, unlike DNA.

  • What are the structural features of DNA and RNA nucleotides?

    Both have a sugar, phosphate group, and nitrogenous base; DNA has deoxyribose, RNA has ribose.

  • Role of gyrase in DNA replication?

    Gyrase relieves supercoiling ahead of the replication fork by cutting and rejoining DNA strands.

  • Role of helicase in DNA replication?

    Helicase unwinds and separates the double-stranded DNA at the replication fork.

  • Role of DNA polymerase III in DNA replication?

    DNA polymerase III synthesizes new DNA strands by adding nucleotides to the 3' end of the primer.

  • Role of DNA polymerase I in DNA replication?

    DNA polymerase I removes RNA primers and replaces them with DNA nucleotides.

  • Role of primase in DNA replication?

    Primase synthesizes short RNA primers to provide a starting point for DNA polymerase.

  • Role of ligase in DNA replication?

    Ligase joins Okazaki fragments on the lagging strand by forming phosphodiester bonds.

  • How does DNA directionality impact replication on leading and lagging strands?

    DNA strands are antiparallel; leading strand is synthesized continuously 5' to 3', lagging strand discontinuously as Okazaki fragments.

  • What is semi-conservative replication?

    Each new DNA molecule contains one original strand and one newly synthesized strand.

  • What is the origin of replication?

    The specific DNA sequence where replication begins and the replication fork forms.

  • Describe transcription in prokaryotes.

    RNA polymerase synthesizes mRNA from DNA template; no introns; occurs in cytoplasm.

  • What roles do rRNA, mRNA, and tRNA play in translation?

    mRNA carries the code, rRNA forms ribosomes, tRNA brings amino acids matching codons.

  • Difference between codons and anticodons?

    Codons are 3-base sequences on mRNA; anticodons are complementary 3-base sequences on tRNA.

  • Difference between introns and exons?

    Introns are non-coding sequences removed during RNA processing; exons are coding sequences expressed in proteins.

  • What is an operon?

    A cluster of genes under control of a single promoter and operator, allowing coordinated gene expression.

  • Difference between inducible and repressible operons?

    Inducible operons are off until activated by an inducer; repressible operons are on until turned off by a corepressor.

  • Why do bacteria use operons?

    Operons provide efficient, coordinated regulation of genes for metabolic advantage.

  • What is reverse transcription and which microbe uses it?

    Conversion of RNA back to DNA; used by retroviruses like HIV.

  • How do mutations contribute to evolution?

    Mutations create genetic variation, which natural selection can act upon.

  • How do base analogs and UV light cause mutations?

    Base analogs mimic bases causing mispairing; UV light causes thymine dimers disrupting DNA replication.

  • Types of mutations: deletion, insertion, frameshift, silent, nonsense, missense?

    Deletion/insertion add/remove bases; frameshift alters reading frame; silent no amino acid change; nonsense creates stop codon; missense changes amino acid.

  • How can the impact of frameshift mutations be minimized?

    By additional insertions or deletions restoring the reading frame downstream.

  • What is the purpose of the Ames test?

    To detect mutagenic potential of chemicals using bacteria.

  • What is excision repair?

    A DNA repair process that removes damaged bases and replaces them to prevent mutations.

  • Define recombination in microbes.

    The exchange of genetic material between DNA molecules, increasing genetic diversity.

  • How do microbes receive resistance genes via horizontal gene transfer?

    Through conjugation, transformation, and transduction.

  • What is conjugation and its role in genetic diversity?

    Transfer of plasmids via pili between bacteria, spreading genes and increasing diversity.

  • How did Griffith's experiment demonstrate transformation?

    Non-virulent bacteria acquired virulence by uptake of DNA from dead virulent bacteria.

  • What is generalized transduction?

    Transfer of bacterial DNA by bacteriophages, leading to genetic variation.

  • What are plasmids and why are they important?

    Small circular DNA molecules that carry genes, important for antibiotic resistance and genetic engineering.

  • What is simple staining in microbiology?

    Use of a single stain to color cells, revealing shape and arrangement.

  • Difference between positive and negative simple stains?

    Positive stains color the cells; negative stains color the background.

  • Purpose of heat fixing a smear?

    To kill bacteria and fix them to the slide for staining.