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bio test one

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  • atomic number


    the number of protons in any given atom

  • mass number


    the number of protons and nutrons

  • isotope


    element with varying number of neutrons (can be charged)

  • mass of an atom


    is equal to its mass number

  • atomic weight


    average mass of atoms in an element

  • an atom is most stable when


    its valance shell is full

  • octet rule


    atoms always need 8 electrons to fill there valance shell (with the exception of the first that only needs 2)

  • covalent bond


    sharing of electrons between to atoms (often to complete valance shell)

  • in a covalent bond electrons are

    1) not shared equally

    2) shared equally


    1)polar

    2)nonpolar

  • electronegativity


    how strongly an atom pulls shared electrons towards itself

  • what bond holds hydrogen and oxygen together?


    polar covalent bonds

  • oxygen charge


    partial negative

  • hydrogen charge


    partial positive

  • ionic bonds


    the electrons are transferred between atoms (resulting in completion of the valance shell)

  • cation


    positively charged ion resulting from the loss of an electron

  • anion


    negatively charged ion resulting from the gain of an electron

  • ion


    atom/molecule that carry's a full charge

  • CHONPS


    the bulk elements required for life

  • shells closer to the nucleus are

    1) higher in energy

    2) lower in energy


    2) lower in energy

  • shells more distant from the nucleus are

    1) higher in energy

    2) lower in energy


    1) higher in energy

  • orbitals


    regions around the nucleus where electrons are found

  • valance electrons


    electrons found in the most distant shell

  • intramolecular bonds


    interactions between atoms within the same molecule

  • intermolecular bonds


    interactions of bonds between atoms of different molecules

  • polar covalent bond


    unequal sharing of electrons between atoms (due to differences in electronegativity)

  • unequal sharing of electrons leads to what


    partial charges

  • more electronegative =


    harder electrons are pulled (partial negative)

  • less electronegative=


    partial postive

  • water


    small polar molecule with 2 hydrogen atoms (partial positive) and 1 oxygen atom (partial negative)

  • bond between 2 water molecules


    hydrogen bond

  • bond between oxygen and hydrogen


    polar covalent bond

  • soulvent


    the substance that does the dissolving

  • solute


    the substance being dissolved

  • solution


    the result of solvent and solute (disruption of ionic bonds)

  • homogenous


    uniformly mixed solution where all parts are evenly distributed

  • heterogenous


    mixed solution where parts are unevenly distributed

  • hydrophobic


    substances that do not dissolve in water (water fearing)

  • hydrophilic


    substances that do dissolve in water (water loving)

  • cohesion


    the ability of water molecules to stick together (water molecules sticking to each other)

  • adhesion


    the ability of water molecules to stick to other molecules that are not water (water sticking to a glass)

  • surface tension


    measure of difficultly of breaking a liquid with force (cohesion and adhesion contribute to surface tension)

  • solid water molecules are


    less packed (expand and form stable hydrogen bonds)

  • liquid water molecules are


    highly packed and constantly forming and breaking hydrogen bonds

  • solid ice has a

    1)lower density

    2) higher density

    than liquid water


    1) lower density

    which allows it to float on liquid water

  • temperature is


    the average kinetic energy of molecules in a solution

  • high temp =


    high average motion

  • low temp =


    low average motion

  • thermal energy


    the total kinetic energy of molecules transferred as heat (ex pool has higher thermal energy than hot coffee bc greater volume of molecules)

  • spesfic heat


    the amount of heat it takes to raise/lower the temperature 1 degree

  • heat of vaporization


    how much energy it takes to convert liquid to gas

  • why does water have a high specific heat capacity?


    because hydrogen bonds when abundant, become difficult to break

  • acids


    any chemical that increases a solutions concentration of H+ ions (decrease pH)

  • bases


    any chemical that decreases a solutions concentration of H+ ions (increase pH)

  • pH


    the measurement of H+ concentration in any given solution

  • pH of most living organisms


    7 (neutral)

  • buffer


    used to resit changes in pH to help maintain homeostasis

  • carbon


    main component of organic molecules (can from 4 bonds)

  • organic molecules


    any molecule with covalently linked carbon and hydrogen atoms

  • carbon functional groups


    1) methal (C-H-H-H)

    2) hydroxl (-OH)

    3) carbonal (c w/ double bond)

  • deyhdration synthesis


    forms a covalent bond to link individual monomers and build a polymer through the removal of a water molecule

  • hydrolisis


    breaks a covalent bond between monomers resulting in the breaking down of a polymer (due to the addition of a water molecule)

  • polymer


    long chains of monomers linked together

  • monomer


    single blocks that when linked together form a polymer

  • proteins


    a class of biomolecule made up of amino acids (monomer)

  • peptide bonds


    covalent bonds linking amino acids together

  • N terminal


    H-N-H (first)

  • C terminal


    O=C-OH (second)

  • amino acid components


    C (central carbon atom)

    H (central hydrogen atom)

    R group

    N terminus (H-N-H )

    C terminus (O=C-OH )

  • primary


    amino acid chain (influences all other levels of stucture)

  • secondary


    alpha helix & beta sheets (held together by hydrogen bonds)

  • tertiary


    overall 3D shape of a polypeptide chain

  • quaternary


    multiple polypeptide chains associate to form a single functional protein

  • denatured protein


    non functional protein whose shape has been altered

  • chaperon protein


    helps denatured protein reform/renature its shape

  • nucleic acids


    a class of biomolecule that store/encode genetic information (DNA)

  • DNA directionality


    5' to 3'

  • DNA primary structure


    sequences of nitrogenous bases (A, T, G, C)

  • DNA secondary structure


    double helix (anti parallel)

  • bonds between (A, T & C, G)


    hydrogen bonds

  • hydrogen bonds


    cause backbone to twist

  • nucleotide components


    1)phosphate group

    2) pentose sugar (H in DNA, OH in RNA)

    3) nitrogenous base

  • pyrimidines


    single ringed molecules (C, T & U)

  • purines


    double ringed molecules (A & G)

  • covalent bonds between nucleotides


    phosphodiester bond

  • nucleic acids key functional groups


    phosphate group (5')

    hydroxyl group

    amino group (3')

  • RNA functions


    template for synthesizing proteins

    can bind to itself to form a secondary structure

  • carbs


    carbon based molecules hydrated with hydroxyl groups (OH)

  • bonds between monosaccharides


    glycosidic bonds

  • simple carbs


    contain only C, H & O

  • complex carbs


    contain C, H & O but also P, N or S

  • carb functions


    structural support

    short term energy storage

  • lipids


    hydrophobic biomolecules that are insoluble in water and highly diverse in their structure and functions

  • lipids can also be


    hydrophilic or amphipathic

  • types of lipids


    fats, oils, waxes, steroids & phospholipids

  • fatty acids


    hydrocarbon chains of varying lengths with a carboxyl acid

  • saturated fatty acids


    fully saturated with hydrogens (only contains carbon-carbon single bonds)

    solid at room temp

  • unsaturated fatty acids


    not fully saturated with hydrogens due to presence of more than 1 carbon-carbon double bond

    double bonds create a kink/bend in the chain which makes them liquid at room temp

  • trans fats


    artificial unsaturated fatty acids that are not kinked (linear)

  • triglycerides


    a lipid with 3 fatty acid chains covalently linked to a single glycerol molecule (through dehydration synthesis)

  • phospholipids


    large class of lipids that contain and phosphate group (amphipathic)

  • prokaryotic cells


    do not have a nucleus

    bacteria and archaea

    divide by binary fission

    small ribosomes

    unicellular

  • eukaryotic cells


    have a nucleus as well as other membrane bond organelles

    plants, animals, fungi

    divide by mitosis/cytokinesis

    large ribosomes

    uni or multicellular

  • bacteria DNA


    circular in shape

  • bacteria ribosomes used for


    building proteins

  • eukaryotic DNA


    linear and found in the nucleus

  • both eukaryotic and prokaryotic cells


    have a cell membrane

    contain major biomolecules (carbs, lipids, proteins, nucleic acids)

  • plant and animal cells contain both


    mitochondria, cell membrane, rough/smooth ER, ribosomes, golgi apparatus, peroxisomes

  • animal exclusive


    lysosomes

  • plant exclusive


    cell wall & chloroplast

  • Ribosomes


    non membranous organelles that build proteins in all living cells

  • translation


    process conducted by ribosomes that builds proteins

  • free ribosome


    floats in the cytoplasm

  • attached ribosome


    bound to another organelle

  • mitochondria


    synthesizes energy within the cell (provides energy in the from of ATP)

  • ATP


    high energy molecule that is used to power cellular reactions

  • cellular respiration


    mitochondrial process that breaks down food sources to make ATP

  • cellular respiration reactants


    glucose + oxygen

  • cellular respiration products


    water, co2 and energy (ATP)

  • mitochondria DNA


    have their own ribosomes DNA + specific mitochondrial DNA

  • mitochondria structure


    1) outer membrane

    2) folded inner membrane

  • the matrix


    region within the inner membrane of the mitochondria. contains enzymes, ribosomes and mitochondrial DNA

  • intermembrane space


    the region between the inner & outer mitochondrial membrane

  • chloroplasts


    green organelles that function as the site of photosynthesis in many plant cells

  • thylakoid


    pancake shaped sacs within the chloroplast

  • grana


    stacks of thylakoid

  • stroma


    innermost region of the chloroplast containing enzymes, ribosomes & chloroplast DNA

  • protein secretion


    process by which a substance (protein) is released into the environment

  • 1) nucleus


    a rounded structure that contains/protects a eukaryotic cells DNA

    protein secretion starts here

    stores DNA to make protein

  • nuclear envelope


    the double membrane barrier that surrounds the nucleus and acts as its barrier

  • nuclear pores


    tiny holes in the envelope that control what enters/exits the nucleus

  • nucleolus


    a small dense structure where ribosomes are assembled

  • the ER


    extension of the nuclear envelope

  • ER lumon


    the internal space within the ER

  • the rough ER


    closer to the nucleus with a ribosome coated surface

  • the rough ER functions


    newly built proteins fold and can be modified in the rough ER

  • smooth ER


    further from the nucleus with a ribosome free surface

  • smooth ER functions


    synthesizes lipids and detoxifies drugs

  • molecules (proteins and lipids) that are synthesized in the ER


    are transported to the golgi apparatus VIA vesicles

  • golgi apparatus


    functions as the processing center

    -receives vesicles

    - modifies vesicle

    -repackages contents for export

  • receiving end of the golgi


    cis end

  • shipping end of golgi


    trans end

  • lysosome


    acidic vesicles that carry digestive enzymes which break down and recycle food debris, bacteria, etc

    -found primarily in animal cells

  • peroxisomes


    vesicles of enzymes that breakdown toxic compounds

    -found in eukaryotic cells and originate in the rough ER

  • cytoskeleton


    a dynamic network of protein fibers inside a cell that gives the cell its shape, provides structural support, and helps organize internal parts

  • cytoskeleton parts


    microfilaments

    microtubules

    intermediate filaments