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Microbiology: Virus Structure, Classification, Replication, and Clinical Aspects

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  • Define virus

    A virus is an obligate intracellular pathogen that requires a host cell to replicate and cannot synthesize its own nucleic acids or proteins independently.

  • Can viruses synthesize their own nucleic acids and proteins apart from a host?

    No, viruses cannot synthesize their own nucleic acids or proteins without a host cell.

  • What does it mean that viruses are obligate intracellular pathogens?

    They must infect and replicate inside a host cell to survive and reproduce.

  • What is a virus that infects a bacterium called?

    A bacteriophage or phage.

  • What is a virion?

    A virion is a complete, infectious virus particle outside a host cell.

  • What is a capsid and what macromolecule makes it up?

    The capsid is the protein coat of a virus, made up of protein subunits called capsomeres.

  • What is a capsomere?

    A capsomere is a protein subunit that assembles to form the viral capsid.

  • List three general virus capsid shapes

    Helical, icosahedral, and complex.

  • What macromolecule comprises the viral envelope?

    The viral envelope is made of lipids derived from the host cell membrane.

  • What is a naked virus?

    A virus without a lipid envelope, consisting only of a nucleocapsid.

  • Where does an enveloped virus obtain its envelope?

    From the host cell membrane during viral budding.

  • What is another term for viral spikes?

    Glycoprotein spikes or peplomers.

  • What macromolecules make up viral spikes?

    Viral spikes are made of glycoproteins.

  • What part of the virus binds to specific factors on a host cell to determine tropism?

    The viral spikes or attachment proteins bind to specific host cell receptors.

  • Name the glycoproteins producing “HA” and “NA” spikes in influenza H1N1

    Hemagglutinin (HA) produces H spikes; Neuraminidase (NA) produces N spikes.

  • Can a single virus genome contain both DNA and RNA?

    No, a virus genome contains either DNA or RNA, but not both.

  • Which type of single-stranded RNA virus genome functions directly as mRNA?

    Single-stranded positive-sense RNA (ssRNA+) genomes function directly as mRNA.

  • What enzyme do single-stranded antisense RNA (ssRNA-) viruses use to make mRNA?

    RNA-dependent RNA polymerase synthesizes mRNA from the RNA template.

  • What is the function of reverse transcriptase?

    It converts viral RNA into DNA for integration into the host genome.

  • Why do RNA viruses mutate more quickly than DNA viruses?

    RNA polymerases lack proofreading, leading to higher mutation rates.

  • Do attenuated virus strains cause disease in healthy hosts?

    Generally, no; attenuated strains are weakened and usually do not cause disease in healthy, non-immunocompromised hosts.

  • Define tropism

    Tropism is the specificity of a virus for a particular host cell type or tissue.

  • Define antigenic drift and antigenic shift in influenza

    Antigenic drift is gradual mutation causing minor changes; antigenic shift is reassortment causing major changes, potentially leading to pandemics.

  • What immunization strategy do Pfizer and Moderna SARS-CoV-2 vaccines use?

    mRNA vaccine technology encoding the spike protein.

  • What viral protein is coded for by Pfizer and Moderna SARS-CoV-2 vaccines?

    The spike (S) glycoprotein.

  • What immunization strategy does Johnson & Johnson SARS-CoV-2 vaccine use?

    A viral vector vaccine using an adenovirus to deliver spike protein DNA.

  • Define host range

    The spectrum of host species a virus can infect.

  • What does broad tropism mean for viruses like Ebola?

    They can infect many different cell types or tissues.

  • True or False: Viruses are classified into domains with kingdom as the highest taxon

    False. Viruses are not classified into domains; their highest taxonomic rank is not kingdom or order.

  • What type of bacteriophage replication kills the host cell upon release?

    Lytic replication kills the host cell when new phages are released.

  • What is a prophage?

    A bacteriophage genome integrated into the host bacterial chromosome.

  • What is phage conversion and its medical importance?

    Phage conversion is when a prophage confers new properties to bacteria, such as toxin production.

  • List the six steps of animal virus replication

    Attachment, entry, uncoating, replication, assembly, and release.

  • Define acute infection

    An infection with rapid onset and short duration.

  • Define persistent infection

    An infection that lasts for months or years, often with continuous or intermittent symptoms.

  • What is a provirus?

    Viral DNA integrated into the host genome in animal cells.

  • Define latent infection

    An infection where the virus remains dormant in host cells and can reactivate later.

  • Which virus causes latent cold sores?

    Herpes simplex virus type 1 (HSV-1).

  • Which virus causes chickenpox and shingles?

    Varicella-zoster virus (VZV) causes chickenpox; reactivation causes shingles.

  • What are oncogenic viruses?

    Viruses that can cause cancer by altering host cell DNA.

  • What percentage of cervical cancer cases are linked to HPV according to CDC?

    Approximately 90% of cervical cancer cases are linked to HPV.

  • Which two retroviruses form proviruses and can cause leukemia or lymphoma?

    Human T-cell leukemia virus types 1 and 2 (HTLV-1 and HTLV-2).

  • What is a plaque in virology?

    A clear zone on a bacterial lawn where phages have lysed cells; one plaque represents one infectious virus particle.

  • What is a concern when vaccines are made from virions purified from fertilized chicken eggs?

    Potential allergic reactions in people with egg allergies.

  • Define sensitivity and specificity in diagnostic testing

    Sensitivity is the ability to detect true positives; specificity is the ability to exclude false positives.

  • What is an agglutination assay in viral detection?

    An assay where antibodies or antigens coated on latex beads clump in presence of their specific counterpart.

  • What type of immunoassay changes color when antigen or antibody binding occurs?

    Enzyme-linked immunosorbent assay (ELISA).

  • What is the seroconversion window?

    The period after infection before antibodies are detectable in the blood.

  • What does PCR amplify and what does PCR stand for?

    PCR amplifies specific DNA sequences; PCR stands for polymerase chain reaction.

  • Why can't viral infections be treated with antibiotics?

    Antibiotics target bacterial structures and processes, not viruses.

  • What is selective toxicity in drug development?

    Drugs target viral components without harming host cells.

  • What two testing categories detect active SARS-CoV-2 infections?

    RT-PCR tests and antigen rapid detection assays.

  • What does RT-PCR detect? What does antigen test detect?

    RT-PCR detects viral RNA; antigen tests detect viral proteins.

  • Which test is the gold standard for SARS-CoV-2 detection?

    RT-PCR test.

  • Define postexposure prophylaxis

    Treatment given after exposure to prevent infection.

  • What are prions?

    Misfolded infectious proteins that cause neurodegenerative diseases.

  • How do normal prion proteins become misfolded?

    Misfolded prions induce normal proteins to change shape, propagating disease.

  • Why are prion diseases called spongiform encephalopathies?

    Because they cause sponge-like holes in brain tissue.

  • Name two inherited spongiform diseases in children

    Familial Creutzfeldt-Jakob disease and Gerstmann-Sträussler-Scheinker syndrome.

  • Which acquired CJD is called mad cow disease?

    Variant Creutzfeldt-Jakob disease (vCJD).

  • What is sporadic CJD linked to?

    Spontaneous misfolding of prion proteins without known cause.

  • How is iatrogenic CJD acquired?

    Through medical procedures involving contaminated instruments or tissue transplants.

  • Name three neurodegenerative diseases linked to misfolded proteins but not prions

    Alzheimer's disease, Parkinson's disease, and Huntington's disease.