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Microbial Genetics and Mutation in Microbiology

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  • What is genetics?

    Genetics is the study of what genes are, how they carry information, how information is expressed, and how genes are replicated.

  • Define gene and genome.

    A gene is a segment of DNA that encodes a functional product, usually a protein. The genome is all the genetic material in a cell.

  • What is the flow of genetic information in a cell?

    Genetic information flows from DNA to RNA (transcription), then RNA to protein (translation). DNA replicates before cell division, and recombination can transfer genes horizontally between cells.

  • Describe the structure of DNA.

    DNA is a double helix with a backbone of deoxyribose phosphate. Nitrogenous bases pair as thymine with adenine and cytosine with guanine, held by hydrogen bonds. Strands are antiparallel (5' to 3' and 3' to 5').

  • What does semi-conservative DNA replication mean?

    Each new DNA molecule consists of one old (template) strand and one newly synthesized strand, preserving half of the original molecule.

  • What roles do DNA polymerase and RNA primer play in DNA replication?

    DNA polymerase synthesizes new DNA strands in the 5' to 3' direction. An RNA primer initiates synthesis by providing a starting point for DNA polymerase.

  • Difference between leading and lagging strands during DNA replication?

    The leading strand is synthesized continuously toward the replication fork; the lagging strand is synthesized discontinuously away from the fork in Okazaki fragments.

  • What enzymes join Okazaki fragments?

    DNA polymerase removes RNA primers and fills gaps; DNA ligase seals the fragments to form a continuous strand.

  • What is transcription and what enzyme is involved?

    Transcription is the process of making RNA from DNA. RNA polymerase binds to the promoter and synthesizes RNA in the 5' to 3' direction until reaching a terminator sequence.

  • How does transcription differ in eukaryotes compared to prokaryotes?

    Eukaryotic transcription produces RNA with exons and introns; introns are removed by ribozymes to form mature mRNA. In prokaryotes, transcription produces mRNA without introns.

  • What are the three types of RNA produced during transcription?

    Messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA).

  • What is translation and what molecules are involved?

    Translation is the synthesis of proteins from mRNA. It involves mRNA, tRNA (carrying amino acids), and rRNA (forming ribosomes).

  • What is the start codon and what amino acid does it code for?

    The start codon is AUG, which codes for the amino acid methionine.

  • Name the three stop codons in translation.

    The stop codons are UAA, UAG, and UGA, signaling termination of protein synthesis.

  • How does translation differ between prokaryotic and eukaryotic cells?

    In prokaryotes, transcription and translation occur simultaneously in the cytoplasm. In eukaryotes, transcription occurs in the nucleus and mRNA must exit to the cytoplasm for translation.

  • What are constitutive enzymes?

    Constitutive enzymes are expressed at a fixed rate regardless of environmental conditions, such as enzymes for glucose metabolism.

  • Difference between repressible and inducible enzymes?

    Repressible enzymes decrease synthesis when not needed (e.g., tryptophan operon). Inducible enzymes are produced only when their substrate is present (e.g., lactose operon).

  • What is an operon?

    An operon is a control region including a promoter, operator, and structural genes regulated together to control gene expression.

  • How does the lac operon work in the presence and absence of lactose?

    Without lactose, the repressor binds the operator, blocking transcription. With lactose, lactose (allolactose) binds the repressor, inactivating it, allowing RNA polymerase to transcribe structural genes.

  • What causes mutations?

    Mutations are changes in genetic material caused by spontaneous errors or mutagens such as chemicals, ionizing radiation (X-rays, gamma rays), and UV light.

  • What is a missense mutation?

    A missense mutation is a base substitution that changes one amino acid in the protein sequence.

  • What is a nonsense mutation?

    A nonsense mutation changes a codon to a stop codon, prematurely terminating protein synthesis.

  • What is a frameshift mutation?

    A frameshift mutation results from insertion or deletion of nucleotides, shifting the reading frame and altering the entire downstream amino acid sequence.

  • How does UV radiation cause mutations?

    UV radiation causes thymine-thymine dimers to form in DNA, distorting the molecule and potentially causing errors during replication.

  • What repair mechanisms fix UV-induced DNA damage?

    Light repair enzymes recognize thymine dimers, cut out damaged DNA, and DNA polymerase and ligase fill and seal the gaps using the intact strand as a template.

  • What is the Ames test used for?

    The Ames test detects mutagenic chemicals by observing reverse mutations in histidine-dependent Salmonella, allowing growth on histidine-free media.

  • What are the three types of horizontal gene transfer in bacteria?

    Transformation, conjugation, and transduction are mechanisms for gene transfer between bacteria of the same generation.

  • Describe bacterial transformation.

    Live bacteria take up fragmented DNA from dead cells and incorporate it into their genome, becoming genetically transformed.

  • Describe bacterial conjugation.

    Conjugation transfers plasmids from an F+ donor cell to an F- recipient via a sex pilus, converting the recipient to F+.

  • What is an Hfr cell?

    An Hfr cell has the F plasmid integrated into its chromosome and can transfer chromosomal genes to a recipient during conjugation.

  • Describe bacterial transduction.

    Transduction occurs when bacteriophages transfer bacterial DNA from a donor to a recipient cell, creating recombinant bacteria.

  • What are plasmids and their types?

    Plasmids are extrachromosomal DNA that enhance bacterial traits. Types include conjugative plasmids (carry sex pili genes), dissimilation plasmids (catabolism enzymes), and R factors (antibiotic resistance).