Skip to main content
Back

General Biology: Energy, Enzymes, and Metabolism

Control buttons has been changed to "navigation" mode.
1/31
  • Kinetic Energy

    Kinetic energy is the energy of motion.

  • Potential Energy

    Potential energy is energy stored in position or configuration, such as chemical bonds.

  • Chemical Energy

    Chemical energy is energy stored in chemical bonds, which can be released during reactions.

  • Relationship between bond strength and potential energy

    Longer, weaker bonds with equally shared electrons have high potential energy. Shorter, stronger bonds with unequal sharing have low potential energy.

  • Why are carbohydrates good energy storage molecules?

    Carbohydrates have many single bonds with high potential energy, making them good for storing energy.

  • Why are lipids more energy dense than carbohydrates?

    Lipids have more nonpolar C-H bonds and greater stability, so breaking them releases more energy than carbohydrates.

  • First law of thermodynamics

    Energy is conserved; it can be transferred or transformed but not created or destroyed.

  • Enthalpy (H)

    Enthalpy is the total energy in a molecule, including potential energy in bonds and kinetic energy effects from pressure and volume.

  • Exothermic vs Endothermic reactions

    Exothermic reactions release heat and have negative change in enthalpy (-H). Endothermic reactions absorb heat and have positive change in enthalpy (+H).

  • Entropy (S)

    Entropy is the amount of disorder in a system; it tends to increase in spontaneous processes (+S).

  • Second law of thermodynamics

    Total entropy of the universe always increases; spontaneous processes increase disorder.

  • Gibbs free energy equation

    Gibbs free energy is given by \(G=H-TS\), where G is free energy, H is enthalpy, T is temperature in Kelvin, and S is entropy.

  • Meaning of Gibbs free energy values

    G < 0: reaction is exergonic and spontaneous.
    G > 0: reaction is endergonic and nonspontaneous.
    G = 0: reaction is at equilibrium.

  • Factors that increase reaction rates

    Higher temperature, higher concentration, and proper molecular orientation increase reaction rates by increasing collision frequency and energy.

  • Energy coupling in metabolism

    Exergonic reactions release energy that can drive endergonic reactions through coupling, often via transfer of electrons or phosphate groups.

  • Oxidation and reduction in redox reactions

    Oxidation is loss of electrons (exergonic). Reduction is gain of electrons (endergonic).

  • Role of NAD+ and FAD in metabolism

    NAD+ and FAD are electron carriers that accept electrons and protons to form NADH and FADH2, storing reducing power.

  • Why is ATP a high-energy molecule?

    ATP has high potential energy due to repulsion between negatively charged phosphate groups and energy stored in their bonds.

  • ATP hydrolysis

    ATP reacts with water to break the bond between its outermost phosphate groups, releasing free energy and forming ADP.

  • Phosphorylation

    Phosphorylation adds a phosphate group to a molecule, increasing its potential energy and enabling energy coupling.

  • Activation energy

    Activation energy is the energy required to start a reaction by breaking bonds and reaching the transition state.

  • How do enzymes lower activation energy?

    Enzymes stabilize the transition state, orient substrates precisely, and reduce entropy to lower activation energy.

  • Induced fit model

    Substrate binding causes a conformational change in the enzyme, improving substrate binding and catalysis.

  • Saturation kinetics in enzymes

    At high substrate concentrations, enzyme active sites are fully occupied, and reaction rate plateaus.

  • Cofactors, coenzymes, and prosthetic groups

    Cofactors are inorganic ions; coenzymes are organic molecules; prosthetic groups are permanently attached non-amino acid molecules aiding enzyme function.

  • Factors affecting enzyme activity

    Temperature, pH, and interactions with other molecules affect enzyme shape and activity.

  • Competitive inhibition

    A molecule competes with the substrate for the enzyme's active site, reducing enzyme activity.

  • Allosteric regulation

    A molecule binds to a site other than the active site, causing a conformational change that activates or inhibits the enzyme.

  • Covalent modification of enzymes

    Reversible changes like phosphorylation alter enzyme shape and activity; irreversible changes involve peptide bond cleavage.

  • Feedback inhibition

    The final product of a metabolic pathway inhibits an earlier enzyme to regulate the pathway and prevent excess product formation.

  • Difference between catabolic and anabolic pathways

    Catabolic pathways break down molecules to release energy.
    Anabolic pathways use energy to build molecules.