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General Biology: Foundations, Chemistry of Life, and Properties of Water

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Introduction to Biology

Properties of Life

Biology is the study of living organisms and their interactions with the environment. All living things share certain properties that define life.

  • Order: Living things exhibit complex but ordered organization. Example: The structure of a sunflower.

  • Regulation: Organisms regulate their internal environment. Example: Birds maintaining constant body temperature.

  • Growth and Development: Organisms grow and develop according to specific instructions coded in their DNA. Example: A caterpillar transforming into a butterfly.

  • Energy Processing: Living things obtain and use energy. Example: Plants performing photosynthesis.

  • Response to Environment: Organisms respond to environmental stimuli. Example: Venus flytrap closing when touched.

  • Reproduction: Organisms reproduce their own kind. Example: Birds laying eggs.

  • Evolutionary Adaptation: Populations evolve over generations. Example: Camouflage in insects.

Emergent Properties

Emergent properties are new characteristics that arise at each level of biological organization, due to the arrangement and interactions of parts as complexity increases.

  • Example 1: A functioning bicycle emerges only when all necessary parts are connected in the correct way.

  • Example 2: The brain's ability to think and feel emerges from the interactions of billions of neurons.

Biological Organization

Levels of Biological Organization

Life is organized in a hierarchy from the largest to the smallest scale:

  • Biosphere: All life on Earth and all places where life exists.

  • Ecosystem: All living things in a particular area, along with nonliving components.

  • Community: All organisms in an ecosystem.

  • Population: All individuals of a species within an area.

  • Organism: An individual living thing.

  • Organ/Organ System: Body parts that perform a specific function.

  • Tissues: Groups of similar cells performing a function.

  • Cells: The basic unit of life.

  • Organelles: Functional components within cells.

  • Molecules: Chemical structures consisting of two or more atoms.

Cell Types

  • Eukaryotic Cell: Contains a nucleus and membrane-bound organelles.

  • Prokaryotic Cell: Lacks a nucleus and membrane-bound organelles.

Genetic Information

  • DNA: The molecule that stores genetic information.

  • Genes: Units of inheritance made of DNA.

  • Genome: The complete set of genetic material in an organism.

Feedback Mechanisms

  • Negative Feedback: A process in which a system is regulated by reducing the output or activity when it exceeds a set point.

  • Positive Feedback: A process in which the end product of an action causes more of that action to occur.

Evolution and Classification

Domains of Life

All life is classified into three domains:

Domain

Characteristics

Bacteria

Prokaryotic, unicellular, diverse environments

Archaea

Prokaryotic, often in extreme environments

Eukarya

Eukaryotic, includes plants, animals, fungi, protists

Levels of Classification

From broadest to most specific:

  • Domain

  • Kingdom

  • Phylum

  • Class

  • Order

  • Family

  • Genus

  • Species

Darwin's Theory of Evolution

  • Main Points: Species show evidence of "descent with modification" from common ancestors; natural selection is the mechanism for evolution.

  • Natural Selection: Individuals with traits best suited to their environment are more likely to survive and reproduce.

The Process of Science

Data and Hypotheses

  • Data: Recorded observations or items of information.

  • Quantitative Data: Numerical measurements (can be graphed).

  • Qualitative Data: Descriptions (e.g., field sketches).

  • Hypothesis: A testable explanation for an observation.

  • Qualities of a Scientific Hypothesis: Must be testable and falsifiable.

  • Scientific Hypotheses: Are never proved, only supported or refuted by evidence.

Basic Chemistry for Biology

Matter and Elements

  • Matter: Anything that takes up space and has mass.

  • Element: A substance that cannot be broken down to other substances by chemical means.

  • Compound: A substance consisting of two or more elements in a fixed ratio.

  • Essential Element: An element required for an organism to survive, grow, and reproduce.

  • Trace Element: An element required by an organism in only minute quantities.

Atomic Structure

  • Proton: Positively charged subatomic particle in the nucleus.

  • Neutron: Neutrally charged subatomic particle in the nucleus.

  • Electron: Negatively charged subatomic particle orbiting the nucleus.

  • Atomic Number: Number of protons in an atom.

  • Atomic Mass: Sum of protons and neutrons.

Electron Shells and Energy

  • Electrons are arranged in shells around the nucleus.

  • Valence electrons are those in the outermost shell and are involved in chemical reactions.

  • Potential Energy: Energy that matter possesses because of its location or structure.

Chemical Bonds

  • Covalent Bond: Sharing of electron pairs between atoms.

  • Nonpolar Covalent Bond: Electrons are shared equally.

  • Polar Covalent Bond: Electrons are shared unequally, leading to partial charges.

  • Ionic Bond: Transfer of electrons from one atom to another, resulting in oppositely charged ions.

  • Hydrogen Bond: Weak attraction between a hydrogen atom and an electronegative atom.

  • Van der Waals Interactions: Weak attractions between molecules or parts of molecules that result from transient local partial charges.

Electronegativity

  • Electronegativity: The attraction of a particular atom for the electrons of a covalent bond.

Table: Molecules and Compounds

Substance

Molecule?

Compound?

Molecular Formula

Structural Formula

Water

Yes

Yes

H2O

H-O-H

Carbon dioxide

Yes

Yes

CO2

O=C=O

Methane

Yes

Yes

CH4

H | H-C-H | H

O2

Yes

No

O2

O=O

Chemical Reactions in Biology

  • Chemical Reaction: The making and breaking of chemical bonds, leading to changes in the composition of matter.

  • Photosynthesis Equation:

  • Reactants: Carbon dioxide and water

  • Products: Glucose and oxygen

Properties of Water

Polarity and Hydrogen Bonding

  • Water is a polar molecule, with oxygen being more electronegative than hydrogen.

  • Hydrogen bonds form between the slightly positive hydrogen of one water molecule and the slightly negative oxygen of another.

Emergent Properties of Water

  • Cohesion: Water molecules stick together due to hydrogen bonding.

  • Adhesion: Water molecules stick to other substances.

  • Surface Tension: A measure of how difficult it is to stretch or break the surface of a liquid.

  • High Specific Heat: Water can absorb or release a large amount of heat with only a slight change in its own temperature.

  • Heat of Vaporization: The quantity of heat a liquid must absorb for 1 g to be converted to gas.

  • Expansion upon Freezing: Ice is less dense than liquid water, so it floats.

  • Versatile Solvent: Water dissolves more substances than any other liquid.

Solvent of Life

  • Solution: A liquid that is a homogeneous mixture of two or more substances.

  • Solvent: The dissolving agent of a solution.

  • Solute: The substance that is dissolved.

  • Hydrophilic: Substances that have an affinity for water.

  • Hydrophobic: Substances that do not have an affinity for water.

Biological Importance of Water's Properties

  • Moderation of temperature helps maintain stable environments for organisms.

  • Ice floating insulates bodies of water, protecting aquatic life in winter.

  • Water's solvent abilities facilitate chemical reactions in cells.

Additional info: These notes are based on foundational concepts in introductory biology, including the chemistry of life and the unique properties of water essential for life on Earth.

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