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Chapter 3: Molecules, Compounds, and Chemical Nomenclature – General Chemistry Study Notes

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Chapter 3: Molecules and Compounds

Introduction to Molecules and Compounds

Molecules and compounds are fundamental concepts in chemistry, describing how atoms combine to form substances with unique properties. The properties of compounds are often very different from those of the elements that compose them.

  • Molecule: A group of atoms bonded together, representing the smallest fundamental unit of a chemical compound.

  • Compound: A substance formed when two or more elements are chemically bonded.

  • Example: Sodium chloride (NaCl) is a compound formed from sodium (a reactive metal) and chlorine (a poisonous gas), yet it is stable and safe as table salt.

Table saltElemental sodiumElemental chlorine

Properties of Compounds vs. Elements

The properties of compounds are generally very different from the properties of the elements that compose them. This is due to the nature of chemical bonding and the arrangement of atoms in compounds.

  • Example: Table salt (NaCl) is safe to eat, while sodium is highly reactive and chlorine is toxic.

Hydrogen and oxygen mixture vs. water compoundComparison table: hydrogen, oxygen, water

Chemical Bonds

Types of Chemical Bonds

Chemical bonds are forces that hold atoms together in compounds. The main types are ionic, covalent, and metallic bonds, each with distinct characteristics and formation mechanisms.

  • Ionic Bonds: Formed between metals and nonmetals by the transfer of electrons, resulting in the formation of ions.

  • Covalent Bonds: Formed between nonmetals by the sharing of electrons, resulting in the formation of molecules.

  • Metallic Bonds: Formed between metals, where electrons are shared and free to move among a structure of cations.

Electron transfer and formation of ionsIonic bond formationElectron sharing in covalent bondCovalent bonding diagramMetallic bond diagramDelocalized electrons in metallic bond

Representing Compounds

Chemical Formulas

Chemical formulas indicate the elements present in a compound and the number of atoms or ions of each element. There are several types of formulas:

  • Empirical Formula: Shows the simplest whole-number ratio of atoms in a compound.

  • Molecular Formula: Shows the actual number of atoms of each element in a molecule.

  • Structural Formula: Shows how atoms are connected in a molecule, often using lines to represent bonds.

Structural formula of glucoseSugar cubes (glucose)Structural formula showing bond typesTable comparing formula types and modelsBall-and-stick and space-filling modelsMethane molecular and structural formula

Classification of Elements and Compounds

Atomic and Molecular Elements

Elements can exist as single atoms (atomic elements) or as molecules (molecular elements). Compounds can be molecular or ionic.

  • Atomic Elements: Exist in nature as single atoms (e.g., Ne, Hg).

  • Molecular Elements: Exist as diatomic or polyatomic molecules (e.g., H2, O2, S8).

  • Molecular Compounds: Composed of two or more covalently bonded nonmetals.

  • Ionic Compounds: Composed of a metal ionically bonded to a nonmetal; basic unit is the formula unit.

Classification of elements and compoundsMercury atomic elementChlorine molecular elementPropane molecular compoundSodium chloride ionic compound

Polyatomic Ions

Definition and Examples

Polyatomic ions are groups of covalently bonded atoms with an overall charge, behaving as a single unit in ionic compounds.

  • Examples: Phosphate (PO43–), Carbonate (CO32–), Nitrite (NO2–), Sulfate (SO42–).

Nitrite polyatomic ionTable of common polyatomic ions

Writing Formulas for Ionic Compounds

General Steps

To write the formula for an ionic compound:

  1. Write the symbol for the metal and its charge, followed by the symbol of the nonmetal and its charge.

  2. Make the magnitude of the charge on each ion become the subscript for the other ion.

  3. Reduce subscripts to the smallest whole-number ratio.

  4. Ensure the sum of the charges of cations cancels the sum of the charges of anions.

Periodic table with predictable ion chargesAluminum and oxygen formula formation

Inorganic Nomenclature

Naming Ionic Compounds

The rules for naming ionic compounds are determined by IUPAC. Names provide information about the composition of the compound.

  • Binary Ionic Compounds: Name of cation (metal) followed by name of anion (nonmetal) with suffix –ide.

  • Example: MgBr2 – magnesium bromide; FeCl3 – iron(III) chloride.

  • Polyatomic Ionic Compounds: Name of cation followed by name of polyatomic anion.

Table of polyatomic ions

Cations with Invariant and Variant Charges

Cations may have a single (invariant) or multiple (variant) possible charges. Variant charge cations require Roman numerals in their names.

  • Invariant charge: Only one type of cation (e.g., Na+).

  • Variant charge: More than one type of cation (e.g., Fe2+, Fe3+).

Naming Ionic Compounds with Polyatomic Anions

Many polyatomic anions contain different numbers of oxygen atoms. The naming conventions are:

  • -ate: More oxygen atoms

  • -ite: Fewer oxygen atoms

  • Prefixes: hypo- (less than), per- (more than)

  • Example: NO2– (nitrite), NO3– (nitrate)

Naming Hydrated Ionic Compounds

Hydrates are ionic compounds containing a specific number of water molecules associated with each formula unit. Prefixes indicate the number of water molecules.

  • Example: MgSO4·7H2O – magnesium sulfate heptahydrate

  • Prefixes: mono-, di-, tri-, tetra-, penta-, hexa-, hepta-, octa-

Naming Molecular Compounds

Rules and Prefixes

Molecular compounds are named using prefixes to indicate the number of atoms. The prefix mono- is omitted for the first element if only one atom is present.

  • Example: NO2 – nitrogen dioxide; N2O – dinitrogen monoxide

  • Prefixes: mono-, di-, tri-, tetra-, penta-, hexa-, hepta-, octa-

Acids

Definition and Naming

Acids are molecular compounds that release hydrogen ions (H+) when dissolved in water. They are named based on their composition:

  • Binary Acids: Composed of hydrogen and a nonmetal; named as hydro- + base name + -ic acid (e.g., HCl – hydrochloric acid).

  • Oxyacids: Composed of hydrogen and an oxyanion; named based on the oxyanion (e.g., H2SO4 – sulfuric acid).

Formula Mass and Molar Mass

Definitions and Calculations

The formula mass is the mass of a molecule in atomic mass units (amu), while the molar mass is the mass of one mole of molecules in grams per mole (g/mol). The molar mass is numerically equivalent to the molecular mass but expressed in grams per mole.

  • Formula Mass: Sum of the atomic masses of all atoms in a molecule.

  • Molar Mass: Used as a conversion factor between mass and number of moles.

  • Example: If the formula mass of CO2 is 61.98 amu, the molar mass is 61.98 g/mol.

Mass Percent Composition

Definition and Calculation

Mass percent composition indicates the relative quantities of each element in a compound. It is calculated as:

  • Formula:

  • Example: Calculate the mass percent of Cl in CCl2F2.

Conversion Factors from Formulas

Mole Ratios and Mass Calculations

Chemical formulas provide mole ratio information, which can be used to determine the number of moles or grams of an element in a given amount of compound.

  • Example: How many moles of Cl are in 38.5 mol of CCl2F2?

  • Example: How many grams of P are in 25.0 grams of glyphosate (C3H8NO5P)?

Summary: Understanding molecules, compounds, and their nomenclature is essential for mastering general chemistry. The ability to write formulas, name compounds, and calculate mass relationships forms the foundation for further study in chemical reactions and quantitative analysis.

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