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Chapter 26: The History of Life on Earth & Phylogeny and the Tree of Life – Study Notes

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The History of Life on Earth

The Geologic Record

The geologic record divides Earth's history into a series of eons, eras, periods, and epochs, providing a timeline for major biological and geological events.

  • Earth's Age: Approximately 4.6 billion years old.

  • Geologic Time Scale: Organizes Earth's history into hierarchical units (eons, eras, periods, epochs).

  • Perspective: If Earth's history were scaled to 46 years, humans would have existed for only about 4 hours, and the industrial revolution would have begun just seconds ago.

Era

Period

Epoch

Age (Millions of Years Ago)

Cenozoic

Quaternary

Holocene

0.01

Cenozoic

Quaternary

Pleistocene

2.6

Cenozoic

Neogene

Pliocene

5.3

Cenozoic

Neogene

Miocene

23

Cenozoic

Paleogene

Oligocene

33.9

Cenozoic

Paleogene

Eocene

56

Cenozoic

Paleogene

Paleocene

66

Mesozoic

Cretaceous

145

Mesozoic

Jurassic

201

Mesozoic

Triassic

252

Paleozoic

Permian

299

Paleozoic

Carboniferous

359

Paleozoic

Devonian

419

Paleozoic

Silurian

444

Paleozoic

Ordovician

485

Paleozoic

Cambrian

541

Precambrian

Proterozoic

1,000

Precambrian

Archean

2,500

Precambrian

Hadean

Approx. 4,600

Formation of Earth & Early Earth

Earth formed about 4.6 billion years ago and was initially inhospitable to life. Over time, conditions stabilized, allowing life to emerge.

  • Hadean Eon: Early Earth was extremely hot and hostile.

  • Oldest Earth Materials: Zircon crystals from Jack Hills, Australia (4.4 billion years old) and rocks from Acasta River, Canada (4.03 billion years old) are the oldest known fragments of Earth.

  • Life-Supporting Conditions: Earth became cooler and more stable, eventually supporting life about 4 billion years ago.

Building Blocks of Life

The origin of life required the formation of organic molecules and the assembly of these molecules into more complex structures.

  • Amino Acids: Fundamental components of proteins, can form spontaneously under certain conditions.

  • Abiotic Synthesis: The formation of organic molecules from inorganic precursors without biological intervention.

  • Self-Assembly: Lipids can spontaneously form vesicles, creating primitive cell membranes.

  • RNA World Hypothesis: Suggests that RNA was the first genetic material, capable of storing information and catalyzing reactions.

Example: Laboratory experiments have shown that amino acids and nucleotides can form under simulated early Earth conditions.

Oldest Evidence of Life & Photosynthesis

Fossil evidence provides insight into the earliest life forms and the development of photosynthesis, which dramatically altered Earth's environment.

  • Stromatolites: Layered structures formed by cyanobacteria, dating back over 3.5 billion years.

  • Photosynthesis: The process by which organisms convert light energy into chemical energy, producing oxygen as a byproduct.

  • Oxygen Revolution: The accumulation of oxygen in the atmosphere (~2.4 billion years ago) led to the extinction of many anaerobic organisms and the formation of banded iron formations (BIFs).m

Example: Banded iron formations are sedimentary rocks with alternating layers of iron-rich minerals, evidence of early photosynthetic activity.

Phylogeny and the Tree of Life

Classification of Living Things

Biologists classify organisms to organize the diversity of life and reflect evolutionary relationships.

  • Taxonomy: The science of naming, describing0, and classifying organisms.

  • Linnaean System: Hierarchical classification: Domain, Kingdom, Phylum, Class, Order, Family, Genus, Species.

  • Binomial Nomenclature: Each species is given a two-part scientific name (Genus species), e.g., Homo sapiens.

Expressing Relationships as Trees

Evolutionary relationships are depicted as branching diagrams called phylogenetic trees.

  • Phylogeny: The evolutionary history of a species or group of species.

  • Phylogenetic Tree: Diagram showing evolutionary relationships; branches represent lineages, and nodes represent common ancestors.

  • Clade: A group consisting of an ancestor and all its descendants (monophyletic group).

Example: The Tree of Life diagram shows the relationships among major groups such as Bacteria, Archaea, and Eukarya.

Cladistics and Homology

Cladistics is a method of inferring evolutionary relationships based on shared derived characteristics (synapomorphies).

  • Homology: Similarity due to shared ancestry (e.g., vertebrate forelimbs).

  • Analogy: Similarity due to convergent evolution, not common ancestry (e.g., wings of bats and insects).

  • Synapomorphy: A shared, derived character unique to a particular clade.

  • Types of Taxa:

    • Monophyletic: Includes ancestor and all descendants.

    • Paraphyletic: Includes ancestor and some, but not all, descendants.

    • Polyphyletic: Includes taxa with different ancestors.

Inferring Phylogenies

Phylogenies are inferred using morphological, molecular, and fossil data.

  • Character Tables: Used to record the presence (1) or absence (0) of traits among taxa.

  • Outgroup Comparison: An outgroup is used to infer the ancestral state of characters.

  • Molecular Phylogenetics: DNA and protein sequences provide additional data for constructing phylogenies.

Example: Molecular clocks estimate divergence times based on the rate of genetic mutations.

Molecular Clocks

Molecular clocks use the rate of genetic mutations to estimate the timing of evolutionary events.

  • Constant Rate: Some genes evolve at a relatively constant rate, allowing estimation of divergence times.

  • Calibration: Fossil evidence is used to calibrate molecular clocks.

Equation:

Summary Table: Types of Taxonomic Groups

Type

Definition

Example

Monophyletic

Includes ancestor and all descendants

Mammals

Paraphyletic

Includes ancestor and some descendants

Reptiles (excluding birds)

Polyphyletic

Includes taxa with different ancestors

Flying mammals (bats and flying squirrels)

Key Terms

  • Stromatolite: Layered sedimentary formation created by cyanobacteria.

  • Banded Iron Formation (BIF): Sedimentary rock with alternating iron-rich layers, evidence of early oxygen production.

  • Clade: A group of organisms that includes an ancestor and all its descendants.

  • Synapomorphy: A shared, derived trait unique to a clade.

  • Homology: Similarity due to shared ancestry.

  • Analogy: Similarity due to convergent evolution.

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