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General Biology: Atomic Structure, Chemical Bonding, and Intermolecular Forces Study Guide

스터디 가이드 - 스마트 노트

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Atomic Structure and Subatomic Particles

Changes in Atomic Composition

Atoms are composed of protons, neutrons, and electrons. Changing the number of these subatomic particles alters the atom's identity, charge, or mass.

  • Proton Gain: If a carbon atom gains a proton, it becomes a nitrogen atom, as the atomic number increases by one.

  • Electron Gain: If a carbon atom gains an electron, it becomes negatively charged, forming a carbon anion.

  • Neutron Gain: If a carbon atom gains a neutron, its atomic mass increases, resulting in a new isotope of carbon.

  • Example: Carbon-14 is an isotope of carbon with 8 neutrons instead of the usual 6.

Electron Configuration and Chemical Bonding

Electron Configuration Diagrams

Electron configuration diagrams show the arrangement of electrons in an atom's orbitals. These diagrams help predict how atoms bond with others.

  • Carbon Atom: Carbon has 6 electrons: 2 in the first shell, 4 in the second shell.

  • Bonding with Hydrogen: Carbon forms covalent bonds with four hydrogen atoms, resulting in methane (CH4).

  • Example: The electron configuration for carbon: 1s2 2s2 2p2.

Types of Chemical Bonds

Atoms bond to achieve stable electron configurations, often following the octet rule.

  • Ionic Bonds: Formed when electrons are transferred from one atom to another, creating ions (e.g., CaCl2).

  • Covalent Bonds: Formed when atoms share electrons (e.g., CH4).

  • Polar Covalent Bonds: Electrons are shared unequally due to differences in electronegativity.

  • Nonpolar Covalent Bonds: Electrons are shared equally between atoms of similar electronegativity.

Determining Bond Type Using Electronegativity

Electronegativity differences between atoms determine the type of bond formed.

  • Nonpolar Covalent: Electronegativity difference < 0.4

  • Polar Covalent: Electronegativity difference between 0.4 and 1.8

  • Ionic: Electronegativity difference > 1.8

  • Example: Chlorine forms ionic bonds with sodium (NaCl), polar covalent bonds with hydrogen (HCl), and nonpolar covalent bonds with itself (Cl2).

Octet Rule and Bond Formation

The Octet Rule

The octet rule states that atoms tend to gain, lose, or share electrons to achieve eight electrons in their valence shell, leading to greater stability.

  • Influence on Bonding: Atoms with incomplete valence shells form bonds to complete their octet.

  • Example: Sodium donates one electron to chlorine to form NaCl, both achieving stable configurations.

Typical Number of Bonds Formed by Common Elements

Atoms form a characteristic number of covalent bonds based on their valence electrons.

  • Hydrogen: 1 bond

  • Oxygen: 2 bonds

  • Nitrogen: 3 bonds

  • Carbon: 4 bonds

Molecular Formulas and Structural Diagrams

Writing Molecular Formulas

Molecular formulas indicate the number and type of atoms in a molecule.

  • Example: Glucose: C6H12O6

Drawing Structural Formulas

Structural formulas show how atoms are connected in a molecule, including the arrangement of bonds.

  • Example: A molecule with 3 carbons, 1 nitrogen, and 1 oxygen can be drawn to show all covalent bonds, ensuring each atom completes its octet.

Hydrogen Bonding and Water Structure

Hydrogen Bonds in Water

Water molecules form hydrogen bonds due to the polarity of the O-H bonds, resulting in partial charges on the atoms.

  • Partial Charges: Oxygen is partially negative (δ-), hydrogen is partially positive (δ+).

  • Hydrogen Bonding: Each water molecule can form up to four hydrogen bonds with neighboring water molecules.

  • Example: Ice structure is stabilized by hydrogen bonds.

Acid-Base Chemistry and pH Regulation

Carbon Dioxide and Ocean pH

Carbon dioxide absorption by oceans affects pH by forming carbonic acid, which dissociates to release hydrogen ions, increasing acidity.

  • Chemical Reaction:

  • Effect: Increased hydrogen ion concentration lowers pH (increases acidity).

Intermolecular Forces

Types of Intermolecular Forces

Intermolecular forces (IMFs) are attractions between molecules that influence physical properties.

  • Hydrogen Bonds: Strong dipole-dipole attractions involving hydrogen and electronegative atoms (O, N, F).

  • Dipole-Dipole Interactions: Attractions between polar molecules.

  • Van der Waals Forces: Weak attractions due to temporary dipoles in molecules.

Functional Groups and IMFs

Different functional groups exhibit different types of intermolecular forces.

Functional Group

Possible IMFs

Hydroxyl (-OH)

Hydrogen bonds, dipole-dipole, Van der Waals

Carbonyl (C=O)

Dipole-dipole, Van der Waals

Carboxyl (-COOH)

Hydrogen bonds, dipole-dipole, Van der Waals

Methyl (-CH3)

Van der Waals

Isotopes and Radiometric Dating

Isotopes in Climate Science

Isotopes are atoms of the same element with different numbers of neutrons. Scientists use isotopic ratios to study past climates.

  • Radiometric Dating: Uses decay rates of radioactive isotopes to determine ages of rocks and fossils.

  • Climate Change Studies: Ratios of oxygen-18 to oxygen-16 in ice cores indicate past temperatures; higher oxygen-18 means warmer conditions.

Electronegativity and Its Role in Biology

Most Prevalent Elements and Their Bonds

Electronegativity is a measure of an atom's ability to attract electrons in a bond. The most prevalent elements in biology are oxygen, carbon, hydrogen, and nitrogen.

  • Oxygen: Highest electronegativity among biological elements; forms polar covalent bonds.

  • Nitrogen: Forms polar covalent bonds; electronegativity lower than oxygen.

  • Carbon: Forms nonpolar and polar covalent bonds; electronegativity of 2.5.

  • Hydrogen: Forms covalent bonds; electronegativity of 2.1.

Element

Electronegativity

Typical Bonds

Oxygen

3.5

Polar covalent

Nitrogen

3.0

Polar covalent

Carbon

2.5

Nonpolar/polar covalent

Hydrogen

2.1

Covalent

Additional info: This study guide expands on the original questions by providing definitions, examples, and tables for clarity and completeness.

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