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Comprehensive Study Notes on Carbohydrates for Biochemistry

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Carbohydrates: Structure, Classification, and Function

Introduction to Carbohydrates

Carbohydrates are polyhydroxy aldehydes or ketones, or compounds that yield such structures upon hydrolysis. They are composed of carbon, hydrogen, and oxygen, and are the most abundant biomolecules on Earth. In humans, glucose is the most important carbohydrate, serving as a primary metabolic fuel.

  • General formula: (applies mainly to monosaccharides)

  • Key elements: Carbon, Hydrogen, Oxygen

  • Importance: Chief metabolic fuel, structural components, precursors for amino acids and fats, components of nucleic acids, blood group substances, and dietary fibers.

Functions of Carbohydrates

  • Metabolic fuel: Oxidation of glucose produces ATP for cellular processes.

  • Energy storage: Glycogen (animals) and starch (plants) serve as energy reserves.

  • Structural roles: Cellulose in plants, peptidoglycans in bacteria, and components in animal tissues.

  • Nucleic acids: Ribose and deoxyribose are integral to DNA and RNA.

  • Blood group substances: Carbohydrates determine blood group antigens.

  • Sweeteners: Some carbohydrates are used as sweeteners.

  • Dietary fiber: Aids nutrient absorption and bowel motility.

  • Protein sparing: Prevents proteins from being used as fuel.

  • Absolute energy source: Essential for brain and red blood cells.

  • Precursors: Used in synthesis of amino acids and fats.

Classification of Carbohydrates

Types of Carbohydrates

Carbohydrates are classified based on the number of sugar units:

  • Monosaccharides: Single sugar unit

  • Disaccharides: Two sugar units

  • Oligosaccharides: 3–10 sugar units

  • Polysaccharides: More than 10 sugar units

Carbohydrate classification diagram

Monosaccharides

Monosaccharides are the simplest carbohydrates and cannot be hydrolyzed into smaller units. They are sweet, solid at room temperature, and highly soluble in water. Monosaccharides serve as building blocks for other carbohydrates.

  • Functional group: Aldoses (aldehyde group) or ketoses (ketone group)

  • Classification by carbon number: Trioses (3C), tetroses (4C), pentoses (5C), hexoses (6C), heptoses (7C)

Ketoses

Ketoses are monosaccharides with a ketone functional group. Examples include dihydroxyacetone (3C), D-erythrulose (4C), D-ribulose and D-xylulose (5C), D-psicose, D-fructose, D-sorbose, and D-tagatose (6C).

Ketoses structures

Aldoses

Aldoses are monosaccharides with an aldehyde functional group. Examples include D-glyceraldehyde (3C), D-erythrose and D-threose (4C), D-arabinose, D-ribose, D-xylose, D-lyxose (5C), and several hexoses (6C) such as D-glucose, D-mannose, D-galactose, D-talose.

Aldoses structures

Pentoses and Hexoses of Physiological Importance

Pentoses and hexoses play crucial roles in metabolism and cellular structure.

Pentoses

Sugar

Source

Biochemical and Clinical Importance

D-Ribose

Nucleic acids and metabolic intermediate

Structural component of nucleic acids and coenzymes, including ATP, NAD(P), and flavin coenzymes

D-Ribulose

Metabolic intermediate

Intermediate in the pentose phosphate pathway

D-Arabinose

Plant gums

Constituent of glycoproteins

D-Xylose

Plant gums, proteoglycans, glycosaminoglycans

Constituent of glycoproteins

L-Xylulose

Metabolic intermediate

Excreted in the urine in essential pentosuria

Pentoses table

Hexoses

Sugar

Source

Biochemical Importance

Clinical Significance

D-Glucose

Fruit juices, hydrolysis of starch, cane or beet sugar, maltose and lactose

Main metabolic fuel for tissues; "blood sugar"

Excreted in urine in diabetes mellitus as a result of hyperglycemia

D-Fructose

Fruit juices, honey, hydrolysis of cane or beet sugar, hydrolysis of inulin, enzymatic isomerization of glucose syrup

Readily metabolized via glucose or directly

Hereditary fructose intolerance leads to fructose accumulation and hypoglycemia

D-Galactose

Hydrolysis of lactose

Readily metabolized to glucose; constituent of glycolipids and glycoproteins

Hereditary galactosemia leads to cataracts

D-Mannose

Hydrolysis of plant mannans/gums

Constituent of glycoproteins

Hexoses table

Stereochemistry of Monosaccharides

Chirality and Stereochemistry

Monosaccharides possess one or more chiral (asymmetric) carbons, which are carbons attached to four different groups. The spatial arrangement of these groups determines the stereochemistry of the molecule. Most sugars used by humans are D-sugars.

  • Chiral carbon: Carbon atom with four different substituents

  • Representation: Wedges and dashed lines indicate bonds projecting in/out of the plane

Methane stereochemistry example

Fischer Projection Formulas

Fischer projections are a simplified way to represent the 3D structure of carbohydrates. The chiral carbon is at the intersection of vertical and horizontal lines. Horizontal bonds project out of the page, vertical bonds project into the page. The most oxidized carbon is placed at the top.

Fischer projection vs stereochemical rendering

Isomerism in Monosaccharides

Types of Isomerism

Monosaccharides exhibit several types of isomerism:

  • Constitutional isomers: Same formula, different connectivity (e.g., glucose vs. fructose)

  • Stereoisomers: Same formula and connectivity, different spatial arrangement

  • Enantiomers: Mirror images, non-superimposable

  • Diastereomers: Not mirror images, non-superimposable

  • Epimers: Differ at only one chiral carbon

  • Anomers: Differ at the anomeric carbon formed during cyclization

  • Pyran-furan isomers: Ring size differences

Enantiomers

Enantiomers are stereoisomers that are mirror images of each other, such as D-erythrose and L-erythrose.

Enantiomers: D-erythrose and L-erythrose

Diastereomers

Diastereomers are stereoisomers that are not mirror images, such as D-erythrose and D-threose.

Diastereomers: D-erythrose and D-threose

Epimers

Epimers differ at only one chiral carbon. For example, D-glucose and D-mannose differ at C-2, while D-glucose and D-galactose differ at C-4.

Cyclization and Anomerism

Monosaccharides with five or more carbons cyclize in solution, forming rings via intramolecular reactions between alcohol and aldehyde (hemiacetal) or ketone (hemiketal). The ring form is depicted using Haworth projections.

Anomerism

Cyclization creates a new chiral center (anomeric carbon), resulting in α and β anomers. The α-anomer has the hydroxyl group down, the β-anomer has it up. Anomers can interconvert via mutarotation.

Cyclization and anomer formation in glucoseCyclization and anomer formation in glucose (alternate representation)Cyclization and anomer formation in fructose

Modified Monosaccharides

Sugar Acids

Sugar acids are formed by oxidation of monosaccharides, resulting in carboxyl groups. Types include:

  • Aldonic acids: Oxidation of the aldehyde group (e.g., gluconic acid)

  • Uronic acids: Oxidation of the terminal hydroxyl group (e.g., glucuronic acid)

  • Aldaric acids: Oxidation of both aldehyde and terminal hydroxyl (e.g., glucaric acid)

Formation of gluconic acid and lactoneAldaric acid structureSugar acid structures

Sugar Alcohols

Sugar alcohols are produced by reduction of the carbonyl group in monosaccharides. They are sweet and used as sugar substitutes.

  • Alditols: Linear molecules, named by adding -itol (e.g., sorbitol, mannitol, xylitol)

  • Clinical relevance: Sorbitol accumulation in diabetics can cause cataracts

  • Biochemical roles: Ribitol in flavin coenzymes, glycerol and myo-inositol in lipids

Sugar alcohols: sorbitol, mannitol, xylitolSugar alcohols: glycerol, myo-inositol, ribitol

Deoxy Sugars

Deoxy sugars have a hydroxyl group replaced by hydrogen. Examples include deoxyribose (component of DNA), L-fucose (component of glycoproteins), and L-rhamnose (component of ouabain).

Sugar Esters

Phosphate esters of monosaccharides are important metabolic intermediates. Ribose in nucleotides (e.g., ATP, GTP) is phosphorylated at the 5' position.

Adenosine-5'-triphosphate structurePhosphate esters of glucose and fructose

Amino Sugars

Amino sugars are hexoses where the hydroxyl group at carbon 2 is replaced by an amine group. Examples include D-glucosamine, D-galactosamine, and D-mannosamine.

Amino sugars: glucosamine and galactosamine

Disaccharides

Structure and Examples

Disaccharides are formed by condensation of two monosaccharides via an O-glycosidic bond. Physiologically important disaccharides include maltose, sucrose, and lactose.

Maltose

Maltose consists of two α-D-glucose units joined by an α(1→4) glycosidic bond. Hydrolyzed by maltase.

Maltose structure

Lactose

Lactose is composed of β-D-galactose and α-D-glucose joined by a β(1→4) glycosidic bond. Hydrolyzed by lactase.

Lactose structure

Sucrose

Sucrose is made of α-D-glucose and β-D-fructose joined by an α,β(1→2) glycosidic bond. Hydrolyzed by sucrase.

Sucrose structure

Cellobiose

Cellobiose is obtained from hydrolysis of cellulose and consists of two D-glucose units joined by β(1→4) linkages. Mammals cannot digest cellobiose.

Cellobiose structure

Polysaccharides (Glycans)

Classification and Structure

Polysaccharides are polymers of monosaccharides joined by O-glycosidic bonds. They are classified as homopolysaccharides (one type of monomer) or heteropolysaccharides (multiple types).

Homopolysaccharides vs heteropolysaccharides

Starch

Starch is a homopolymer of glucose, serving as a storage carbohydrate in plants. It exists as amylose (linear, α(1→4) linkages) and amylopectin (branched, α(1→4) and α(1→6) linkages).

Glycogen

Glycogen is the major storage polysaccharide in animals, similar to amylopectin but more highly branched (branch points every 8–12 residues).

Amylopectin vs glycogen branching

Inulin

Inulin is a polysaccharide of fructose (fructosan) with β(2→1) linkages. Used to measure glomerular filtration rate.

Inulin structure

Cellulose

Cellulose is a structural polysaccharide in plant cell walls, composed of β-D-glucose units with β(1→4) linkages. Mammals cannot digest cellulose.

Pectin

Pectin is a heteropolysaccharide mainly of β-D-galacturonic acid, used as a gelling agent in foods.

Chitin

Chitin is a structural polysaccharide in exoskeletons and cell walls, composed of N-acetylglucosamine units with β-glycosidic bonds.

Chitin structure

Agarose and Agar

Agarose is a linear polymer of agarobiose (D-galactose and 3,6-anhydro-L-galactose), used in electrophoresis. Agar is a mixture of agarose and agaropectin, used as a culture medium and thickener.

Peptidoglycan (Murein)

Peptidoglycan is a structural polysaccharide in bacterial cell walls, composed of N-acetylglucosamine and N-acetylmuramic acid with β(1→4) linkages, cross-linked by peptides.

Peptidoglycan structure

Glycosaminoglycans (GAGs)

Structure and Classification

GAGs are complex heteropolysaccharides found in the extracellular matrix, composed of repeating disaccharide units of acetylated amino sugars and uronic acids. Some are sulfated.

  • Classes: Hyaluronic acid, heparin, heparan sulfate, keratan sulfate, dermatan sulfate, chondroitin-4-sulfate, chondroitin-6-sulfate

Hyaluronic Acid

Contains D-glucuronic acid and N-acetylglucosamine. Functions as a lubricant and shock absorber in joints, and is a component of the vitreous humor and extracellular matrix.

Hyaluronic acid structure

Heparin

Intracellular GAG with high negative charge density. Natural anticoagulant, binds antithrombin.

Heparin structure

Heparan Sulfate

Similar to heparin but with fewer sulfate groups and some acetylated amino groups. Extracellular GAG.

Keratan Sulfate

Contains D-galactose and N-acetylglucosamine. Only GAG without uronic acid. Found in cornea, cartilage, tendons, bones, and "horny" structures.

Keratan sulfate structure

Dermatan Sulfate

Contains L-iduronic acid and N-acetylgalactosamine. Contributes to skin pliability and is present in blood vessels, heart valves, and sclera of the eye.

Dermatan sulfate structure

Chondroitin Sulfates

Contains D-glucuronic acid and N-acetylgalactosamine sulfate. Most abundant GAG, found in cartilage, tendons, ligaments, and aorta walls.

Chondroitin sulfate structure

Glycoconjugates

Types and Functions

Glycoconjugates are compounds where carbohydrates are covalently linked to other macromolecules. Types include proteoglycans, glycoproteins, glycolipids, and lipopolysaccharides.

Proteoglycans

Carbohydrates (mainly GAGs) covalently linked to proteins, found on cell surfaces and in the extracellular matrix. The carbohydrate portion is the main site of biological activity.

Glycoproteins

Proteins with covalently attached carbohydrates (mono-, di-, or oligosaccharides). The protein content is higher than the carbohydrate content.

Classification of Glycoproteins

  • O-linked: Carbohydrate attached to hydroxyl side chains of serine or threonine

  • N-linked: Carbohydrate attached to amide nitrogen of asparagine

  • GPI-linked: Linked to carboxyl terminal amino acid via phosphoryl-ethanolamine moiety joined to an oligosaccharide, linked via glucosamine to phosphatidylinositol

Functions of Glycoproteins

  • Structural molecules (e.g., collagen)

  • Cell surface receptors for hormones and drugs

  • Hormones (e.g., FSH, TSH, hCG)

  • ABO blood group substances

  • Enzymes (e.g., alkaline phosphatase)

  • Pathogen attachment (e.g., HIV, Influenza A)

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