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Molecules of Life and Biochemical Reactions: Study Notes for General Biology

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Molecules of Life

Major Classes of Biological Molecules

All living organisms are composed of four main classes of organic molecules: carbohydrates, lipids, proteins, and nucleic acids. These molecules serve as the building blocks of life, each with unique structures and functions essential for cellular processes.

  • Carbohydrates: Organic compounds made of carbon, hydrogen, and oxygen, typically with a 1:2:1 ratio. They provide energy and structural support. Examples: Glucose, Galactose, Fructose (monosaccharides).

  • Lipids: Hydrophobic molecules including fats, oils, and phospholipids. They store energy, insulate, and form cell membranes. Examples: Glycerol, Fatty acids, Triglycerides.

  • Proteins: Polymers of amino acids, containing an amino group, carboxylic acid group, and a variable R side chain. They perform structural, enzymatic, and regulatory functions. Examples: Alanine, Cysteine (amino acids).

  • Nucleic Acids: Polymers of nucleotides, which include a sugar, phosphate group, and nitrogenous base. They store and transmit genetic information. Examples: DNA, RNA (nucleotides shown in model).

Key Structural Features

  • Carbohydrates have ring structures with multiple hydroxyl (–OH) groups.

  • Lipids have long hydrocarbon chains (fatty acids) and a glycerol backbone. Triglycerides are formed from glycerol and three fatty acids.

  • Proteins have a central (alpha) carbon bonded to an amino group (–NH2), carboxyl group (–COOH), hydrogen, and a variable R group.

  • Nucleic acids have a sugar-phosphate backbone and nitrogenous bases (A, T, C, G, U).

Table: Comparison of Major Biological Molecules

Molecule Type

Monomer

Main Elements

Function

Carbohydrate

Monosaccharide

C, H, O

Energy, structure

Lipid

Glycerol + Fatty acids

C, H, O (less O)

Energy storage, insulation, membranes

Protein

Amino acid

C, H, O, N (sometimes S)

Structure, enzymes, signaling

Nucleic Acid

Nucleotide

C, H, O, N, P

Genetic information

Biochemical Reactions

Types of Biochemical Reactions

Cells build and break down molecules through specific chemical reactions. The two main types are dehydration synthesis (condensation) and hydrolysis.

  • Dehydration Synthesis: Joins two molecules by removing a water molecule. Forms bonds such as glycosidic (carbohydrates), peptide (proteins), and ester (lipids).

  • Hydrolysis: Breaks a bond by adding water, splitting large molecules into smaller units.

Examples of Biochemical Reactions

  • Carbohydrate Synthesis: Glucose + Fructose → Sucrose + H2O

  • Protein Synthesis: Amino acid 1 + Amino acid 2 → Dipeptide + H2O

  • Lipid Synthesis: Glycerol + Fatty acid → Monoglyceride + H2O

Bond Types Formed

  • Glycosidic bond: Joins monosaccharides in carbohydrates.

  • Peptide bond: Joins amino acids in proteins.

  • Ester bond: Joins fatty acids to glycerol in lipids.

Enzymatic Hydrolysis

  • Hydrolysis reactions use water to break bonds, releasing monomers from polymers.

  • Enzymes that catalyze hydrolysis often have names ending in -ase (e.g., lipase, protease).

Properties and Functions of Biological Molecules

Carbohydrates

  • Primary source of quick energy for cells.

  • Stored as glycogen in animals and starch in plants.

  • Contain sugar, often with a ring structure.

Lipids

  • Store energy more efficiently than carbohydrates.

  • Form cell membranes (phospholipids).

  • Insulate and protect organs.

  • Saturated fatty acids: No double bonds, straight chains, solid at room temperature.

  • Unsaturated fatty acids: One or more double bonds, kinked chains, liquid at room temperature.

Table: Saturated vs. Unsaturated Fatty Acids

Type

Structure

Physical State

Source

Saturated

No double bonds

Solid

Animal fats, butter

Unsaturated

One or more double bonds

Liquid

Plant oils, vegetable oil

Proteins

  • Made of 20 different amino acids, each with a unique R group.

  • Functions include catalysis (enzymes), structure (collagen), transport (hemoglobin), and signaling (hormones).

  • All amino acids share an amino group, carboxyl group, and central carbon.

Nucleic Acids

  • DNA and RNA store and transmit genetic information.

  • Composed of nucleotides (sugar, phosphate, nitrogenous base).

Scientific Concepts and Applications

Energy in Biological Molecules

  • Breaking bonds requires energy; forming bonds releases energy.

  • Cells use carbohydrates for quick energy because they are easily broken down.

  • Lipids provide long-term energy storage.

Role of Water in Metabolism

  • Water is essential for hydrolysis reactions, breaking down polymers into monomers.

  • Water acts as a solvent, medium for chemical reactions, and helps regulate temperature.

Trans Fats

  • Trans fats are artificially created by hydrogenating unsaturated fats, making them solid at room temperature.

  • Associated with negative health effects.

Key Equations

  • General formula for monosaccharides:

  • Dehydration synthesis (example):

  • Hydrolysis (example):

Example

  • Formation of a peptide bond: Two amino acids join via dehydration synthesis, releasing water and forming a dipeptide.

  • Hydrolysis of sucrose: Sucrose + H2O → Glucose + Fructose

Additional info: Some explanations and context have been expanded for clarity and completeness, including the comparison tables and definitions of key terms.

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