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Ch. 13 - The Genetic Code and Transcription
Klug - Concepts of Genetics 12th Edition
Klug12th EditionConcepts of GeneticsISBN: 9780135564776당신이 사용하는 게 아니라요?교과서 변경
13장, 문제 31a

M. Klemke et al. (2001) discovered an interesting coding phenomenon in which an exon within a neurologic hormone receptor gene in mammals appears to produce two different protein entities (and ALEX). The following is the DNA sequence of the exon's end derived from a rat.
  5'-gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG
The lowercase letters represent the initial coding portion for the protein, and the uppercase letters indicate the portion where the ALEX entity is initiated. (For simplicity, and to correspond with the RNA coding dictionary, it is customary to represent the coding (non-template) strand of the DNA segment.)
Convert the coding DNA sequence to the coding RNA sequence.

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Step 1: Understand the problem. The task is to convert the coding DNA sequence provided into the coding RNA sequence. Remember that the coding strand of DNA is complementary to the template strand and matches the RNA sequence except that thymine (T) in DNA is replaced by uracil (U) in RNA.
Step 2: Identify the DNA sequence provided. The sequence is: 5'-gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG.
Step 3: Replace all occurrences of thymine (T) in the DNA sequence with uracil (U) to create the RNA sequence. For example, 'gtccca' becomes 'guccca'.
Step 4: Ensure that the RNA sequence maintains the same directionality (5' to 3') as the DNA coding strand. The uppercase letters in the sequence should remain uppercase in the RNA sequence, as they represent a specific coding region.
Step 5: Write out the final RNA sequence after replacing all thymine (T) with uracil (U). The sequence should now be in RNA format, ready for further analysis or use.

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주요 개념

질문에 올바르게 답하기 위해 반드시 이해해야 하는 핵심 개념들은 다음과 같습니다.

Transcription

Transcription is the process by which the genetic information encoded in DNA is copied into messenger RNA (mRNA). During transcription, RNA polymerase binds to the DNA at the promoter region and synthesizes a single strand of RNA complementary to the DNA template strand. In this case, the coding DNA sequence is transcribed into RNA, replacing thymine (T) with uracil (U) in the RNA sequence.
추천 영상:
가이드 코스
09:16
Eukaryotic Transcription

Exons and Introns

Exons are the coding regions of a gene that are retained in the final mRNA after the splicing process, while introns are non-coding regions that are removed. In the context of the question, the exon mentioned is responsible for producing two different protein entities, indicating that alternative splicing may occur, allowing for the generation of multiple proteins from a single gene. Understanding the distinction between exons and introns is crucial for interpreting the coding sequence.
추천 영상:
가이드 코스
08:39
mRNA Processing

Alternative Splicing

Alternative splicing is a regulatory mechanism that allows a single gene to produce multiple mRNA variants by including or excluding certain exons during the splicing process. This phenomenon can lead to the production of different protein isoforms, such as the two entities mentioned (and ALEX) in the question. Recognizing how alternative splicing contributes to protein diversity is essential for understanding the complexity of gene expression and function.
추천 영상:
가이드 코스
01:57
Alternative DNA Forms
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교과서 질문

M. Klemke et al. (2001) discovered an interesting coding phenomenon in which an exon within a neurologic hormone receptor gene in mammals appears to produce two different protein entities (and ALEX). The following is the DNA sequence of the exon's end derived from a rat.

 5'-gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG

The lowercase letters represent the initial coding portion for the protein, and the uppercase letters indicate the portion where the ALEX entity is initiated. (For simplicity, and to correspond with the RNA coding dictionary, it is customary to represent the coding (non-template) strand of the DNA segment.)

Locate the initiator codon within the ALEX segment. Are the two initiator codons in frame?

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교과서 질문

The genetic code is degenerate. Amino acids are encoded by either 1, 2, 3, 4, or 6 triplet codons. An interesting question is whether the number of triplet codes for a given amino acid is in any way correlated with the frequency with which that amino acid appears in proteins. That is, is the genetic code optimized for its intended use? Some approximations of the frequency of appearance of nine amino acids in proteins in E. coli are given in the following:

Devise a way to graphically compare the two sets of information (data).

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교과서 질문

M. Klemke et al. (2001) discovered an interesting coding phenomenon in which an exon within a neurologic hormone receptor gene in mammals appears to produce two different protein entities (and ALEX). The following is the DNA sequence of the exon's end derived from a rat.

 5'-gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG

The lowercase letters represent the initial coding portion for the protein, and the uppercase letters indicate the portion where the ALEX entity is initiated. (For simplicity, and to correspond with the RNA coding dictionary, it is customary to represent the coding (non-template) strand of the DNA segment.)

Locate the initiator codon within the XLαs segment.

609
views
교과서 질문

M. Klemke et al. (2001) discovered an interesting coding phenomenon in which an exon within a neurologic hormone receptor gene in mammals appears to produce two different protein entities (and ALEX). The following is the DNA sequence of the exon's end derived from a rat.

 5'-gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG

The lowercase letters represent the initial coding portion for the protein, and the uppercase letters indicate the portion where the ALEX entity is initiated. (For simplicity, and to correspond with the RNA coding dictionary, it is customary to represent the coding (non-template) strand of the DNA segment.)

Provide the amino acid sequence for each coding sequence. In the region of overlap, are the two amino acid sequences the same?

503
views
교과서 질문

The genetic code is degenerate. Amino acids are encoded by either 1, 2, 3, 4, or 6 triplet codons. An interesting question is whether the number of triplet codes for a given amino acid is in any way correlated with the frequency with which that amino acid appears in proteins. That is, is the genetic code optimized for its intended use? Some approximations of the frequency of appearance of nine amino acids in proteins in E. coli are given in the following:

Analyze your data to determine what, if any, correlations can be drawn between the relative frequency of amino acids making up proteins and the number of codons for each. Write a paragraph that states your specific and general conclusions.

713
views
교과서 질문

The genetic code is degenerate. Amino acids are encoded by either 1, 2, 3, 4, or 6 triplet codons. An interesting question is whether the number of triplet codes for a given amino acid is in any way correlated with the frequency with which that amino acid appears in proteins. That is, is the genetic code optimized for its intended use? Some approximations of the frequency of appearance of nine amino acids in proteins in E. coli are given in the following:

How would you proceed with your analysis if you wanted to pursue this problem further?

745
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