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Ch. 16 - Genomics: Genetics from a Whole-Genome Perspective
Sanders - Genetic Analysis: An Integrated Approach 3rd Edition
Sanders3rd EditionGenetic Analysis: An Integrated ApproachISBN: 9780135564172당신이 사용하는 게 아니라요?교과서 변경
16장, 문제 21

A modification of the two-hybrid system, called the one-hybrid system, is used for identifying proteins that can bind specific DNA sequences. In this method, the DNA sequence to be tested, the bait, is fused to a TATA box to drive expression of a reporter gene. The reporter gene is often chosen to complement a mutant phenotype; for example, a HIS gene may be used in a his⁻ mutant yeast strain. A cDNA library is constructed with the cDNA sequences translationally fused to the GAL4 activation domain and transformed into this yeast strain. Diagram how trans-acting proteins that bind to cis-acting regulatory sequences can be identified using a one-hybrid screen.

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1
Understand the key components of the one-hybrid system: the bait DNA sequence (a cis-acting regulatory element) fused upstream of a minimal promoter such as a TATA box, which controls the expression of a reporter gene (e.g., HIS gene).
Recognize that the reporter gene is integrated into a yeast strain with a mutant phenotype (e.g., his⁻), so expression of the reporter gene can restore the wild-type phenotype, allowing growth on selective media.
Construct a cDNA library where each cDNA is fused to a known transcriptional activation domain (such as the GAL4 activation domain), creating fusion proteins that can potentially bind to the bait DNA sequence if they recognize it.
Transform the yeast strain containing the bait-reporter construct with the cDNA library plasmids, so that each yeast cell expresses a different fusion protein from the library.
Select for yeast cells that grow on selective media lacking histidine; these cells express the reporter gene because the fusion protein binds the bait DNA sequence, activating transcription. These positive clones identify trans-acting proteins that specifically bind the cis-acting bait sequence.

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One-Hybrid System

The one-hybrid system is a molecular biology technique used to identify proteins that bind specific DNA sequences. It involves fusing a DNA sequence of interest (bait) upstream of a reporter gene, which is activated only when a protein binds the bait. This method helps detect DNA-protein interactions by linking binding events to reporter gene expression.
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가이드 코스
08:26
Functional Genomics

Cis-acting and Trans-acting Elements

Cis-acting elements are DNA sequences, like promoters or enhancers, that regulate gene expression on the same DNA molecule. Trans-acting factors are proteins, such as transcription factors, that bind these cis-elements to modulate transcription. Identifying trans-acting proteins that bind specific cis-elements is key to understanding gene regulation.
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Reporter Gene and Selection in Yeast

Reporter genes produce easily measurable products, allowing detection of protein-DNA interactions. In yeast one-hybrid assays, reporter genes like HIS complement mutant strains lacking histidine synthesis, enabling growth only if the reporter is activated. This selection links protein binding to survival, facilitating identification of DNA-binding proteins.
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가이드 코스
05:54
Natural Selection
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A substantial fraction of almost every genome sequenced consists of genes that have no known function and that do not have sequence similarity to any genes with known function. How would your approach change if the genes of unknown function were in the human genome?

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Substantial fractions of the genomes of many plants consist of segmental duplications; for example, approximately 40% of genes in the Arabidopsis genome are duplicated. How might you approach the functional characterization of such genes using reverse genetics?

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When the human genome is examined, the chromosomes appear to have undergone only minimal rearrangement in the 100 million years since the last common ancestor of eutherian mammals. However, when individual humans are examined or when the human genome is compared with that of chimpanzees, a large number of small indels and SNPs can be detected. How are these observations reconciled?

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