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Microbial Metabolism - Microbiology

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  • What is metabolism?

    Metabolism is the sum of all chemical reactions within a living organism that provide energy and create substances sustaining life.

  • Difference between catabolism and anabolism

    Catabolism breaks down complex molecules, releasing energy (exergonic). Anabolism builds complex molecules using energy (endergonic).

  • Role of ATP in metabolism

    ATP stores energy released by catabolic reactions and provides energy for anabolic reactions.

  • What are enzymes?

    Enzymes are biological catalysts that speed up chemical reactions by lowering activation energy without being consumed.

  • What is activation energy?

    Activation energy is the minimum collision energy required for a chemical reaction to occur.

  • How do enzymes work?

    Enzymes bind substrates at their active site, form an enzyme-substrate complex, transform substrates into products, and release them unchanged.

  • Components of an enzyme

    Apoenzyme (protein part, inactive alone), cofactor (nonprotein activator), and holoenzyme (active enzyme = apoenzyme + cofactor).

  • Factors influencing enzyme activity

    Temperature, pH, substrate concentration, and inhibitors affect enzyme activity; extreme temperature or pH can denature enzymes.

  • Difference between competitive and noncompetitive inhibition

    Competitive inhibitors bind the active site, blocking substrate binding. Noncompetitive inhibitors bind allosteric sites, changing enzyme shape and function.

  • What is feedback inhibition?

    End-product of a metabolic pathway binds allosterically to the first enzyme, inhibiting the pathway to regulate product levels.

  • What are ribozymes?

    Ribozymes are RNA molecules that act as catalysts, often involved in RNA splicing and protein synthesis.

  • Define oxidation and reduction

    Oxidation is the loss of electrons; reduction is the gain of electrons; redox reactions involve both processes.

  • How is ATP generated biologically?

    ATP is generated by phosphorylation of ADP via substrate-level, oxidative, or photophosphorylation.

  • What is substrate-level phosphorylation?

    ATP is formed by direct transfer of a phosphate group from a phosphorylated substrate to ADP.

  • What is oxidative phosphorylation?

    Electrons pass through an electron transport chain, creating a proton gradient used by ATP synthase to generate ATP.

  • What is photophosphorylation?

    Light energy excites electrons in photosynthetic cells, driving ATP synthesis via an electron transport chain.

  • Describe glycolysis

    Glycolysis oxidizes glucose to pyruvic acid, producing a net gain of 2 ATP and 2 NADH through 10 enzymatic steps.

  • What are the pentose phosphate and Entner-Doudoroff pathways?

    Alternative pathways to glycolysis that produce NADPH and intermediates for biosynthesis; Entner-Doudoroff also produces ATP.

  • What occurs in the Krebs cycle?

    Acetyl CoA is oxidized, producing NADH, FADH2, ATP, and releasing CO2 as waste.

  • What is the final electron acceptor in aerobic respiration?

    Oxygen (O2) is the final electron acceptor in aerobic respiration, forming water.

  • Difference between aerobic and anaerobic respiration

    Aerobic uses oxygen as final electron acceptor; anaerobic uses other inorganic molecules, yielding less energy.

  • What is fermentation?

    Energy-releasing process that does not require oxygen, uses organic molecules as final electron acceptors, and produces small ATP amounts.

  • Examples of fermentation end-products

    Lactic acid, ethanol, CO2, propionic acid, butanol, acetone, and others depending on the organism.

  • How are lipids and proteins catabolized?

    Lipids are broken into glycerol and fatty acids; proteins into amino acids, which enter metabolic pathways after modification.

  • How are bacteria identified biochemically?

    By detecting enzymes through tests like fermentation, oxidase, decarboxylation, deamination, and H2S production.

  • What are cyclic and noncyclic photophosphorylation?

    Cyclic photophosphorylation recycles electrons to produce ATP only; noncyclic produces ATP and NADPH with oxygen release.

  • What is the Calvin-Benson cycle?

    Light-independent reaction using ATP and NADPH to fix CO2 into sugars.

  • What are chemoautotrophs and chemoheterotrophs?

    Chemoautotrophs use inorganic chemicals and CO2; chemoheterotrophs use organic chemicals for energy and carbon.

  • What are amphibolic pathways?

    Metabolic pathways functioning in both anabolism and catabolism, sharing intermediates.