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Ch. 26 - Bacteria and Archaea
Freeman - Biological Science 7th Edition
Freeman7th EditionBiological ScienceISBN: 9783584863285Not the one you use?Change textbook
Chapter 26, Problem 15

Three-domain hypothesis tree showing Bacteria, Archaea, and Eukarya as distinct lineages.
The traditional tree of life (shown above) presents the three domains as distinct, monophyletic lineages. However, other hypotheses propose different views on the relationships among the Archaea, Bacteria, and Eukarya. In particular, the two-domain hypothesis—or eocyte hypothesis—is emerging as a well-supported alternative to the three-domain hypothesis. The eocyte hypothesis, illustrated below, suggests that eukaryotes evolved from eocytes (also known as the Crenarchaeota—a major lineage of the Archaea). Resolving the relationships among these ancient lineages is difficult, but it has profound implications on our understanding of the origin of eukaryotic cells.
Diagram illustrating the two-domain hypothesis showing Archaea and Bacteria as distinct lineages.
Evaluate this statement: According to the two-domain hypothesis, all members of the domain Archaea are prokaryotes and therefore lack membrane-bound nuclei.

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1
Begin by understanding the two-domain hypothesis, which suggests that eukaryotes evolved from a specific group within the Archaea known as Crenarchaeota or eocytes.
Examine the image provided, which illustrates the two-domain hypothesis. Notice that the Archaea are divided into 'Other archaea' and 'Crenarchaeota (eocytes)', with Eukaryota branching from the Crenarchaeota.
Recall that prokaryotes, including Archaea, are characterized by the absence of membrane-bound nuclei. This is a fundamental trait of prokaryotic cells.
Consider the implications of the two-domain hypothesis: while it suggests a close evolutionary relationship between eukaryotes and eocytes, it does not change the fact that all Archaea, including eocytes, are prokaryotic and lack membrane-bound nuclei.
Conclude that according to the two-domain hypothesis, all members of the domain Archaea, including those from which eukaryotes are proposed to have evolved, are indeed prokaryotes and lack membrane-bound nuclei.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Three-Domain Hypothesis

The Three-Domain Hypothesis classifies all life into three major domains: Bacteria, Archaea, and Eukarya. This model suggests that these domains are distinct and monophyletic, meaning they each share a common ancestor. It emphasizes the fundamental differences between prokaryotic organisms (Bacteria and Archaea) and eukaryotic organisms (Eukarya), particularly in cellular structure and genetic organization.
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3 Domains of Life

Two-Domain Hypothesis (Eocyte Hypothesis)

The Two-Domain Hypothesis, also known as the eocyte hypothesis, proposes that Eukarya evolved from a specific lineage of Archaea called eocytes. This model suggests that instead of being a separate domain, Eukarya is nested within Archaea, indicating a closer evolutionary relationship. This hypothesis challenges the traditional view of the Three-Domain model and has implications for understanding the origin of complex cellular structures in eukaryotes.
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Predictions, Hypotheses, & Theories

Prokaryotes vs. Eukaryotes

Prokaryotes are unicellular organisms that lack a membrane-bound nucleus and other organelles, while eukaryotes have a defined nucleus and complex cellular structures. All members of the domain Archaea are classified as prokaryotes, which means they do not possess membrane-bound nuclei. This distinction is crucial for understanding the fundamental differences in cellular organization and function between these two groups of organisms.
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Recap: Prokaryotic vs. Eukaryotic Cells
Related Practice
Textbook Question

The traditional tree of life (shown above) presents the three domains as distinct, monophyletic lineages. However, other hypotheses propose different views on the relationships among the Archaea, Bacteria, and Eukarya. In particular, the two-domain hypothesis—or eocyte hypothesis—is emerging as a well-supported alternative to the three-domain hypothesis. The eocyte hypothesis, illustrated below, suggests that eukaryotes evolved from eocytes (also known as the Crenarchaeota—a major lineage of the Archaea). Resolving the relationships among these ancient lineages is difficult, but it has profound implications on our understanding of the origin of eukaryotic cells.

The Bacteria and Archaea both include microscopic prokaryotes that lack membrane-bound nuclei. What criteria have led to the classification of these two groups as separate domains?

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Textbook Question

The traditional tree of life (shown above) presents the three domains as distinct, monophyletic lineages. However, other hypotheses propose different views on the relationships among the Archaea, Bacteria, and Eukarya. In particular, the two-domain hypothesis—or eocyte hypothesis—is emerging as a well-supported alternative to the three-domain hypothesis. The eocyte hypothesis, illustrated below, suggests that eukaryotes evolved from eocytes (also known as the Crenarchaeota—a major lineage of the Archaea). Resolving the relationships among these ancient lineages is difficult, but it has profound implications on our understanding of the origin of eukaryotic cells.

Early ideas on the classification of life recognized all organisms as belonging to one of two fundamental lineages—prokaryotes or eukaryotes. Is this view compatible with either of the hypotheses illustrated here? Explain.

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Textbook Question

The traditional tree of life (shown above) presents the three domains as distinct, monophyletic lineages. However, other hypotheses propose different views on the relationships among the Archaea, Bacteria, and Eukarya. In particular, the two-domain hypothesis—or eocyte hypothesis—is emerging as a well-supported alternative to the three-domain hypothesis. The eocyte hypothesis, illustrated below, suggests that eukaryotes evolved from eocytes (also known as the Crenarchaeota—a major lineage of the Archaea). Resolving the relationships among these ancient lineages is difficult, but it has profound implications on our understanding of the origin of eukaryotic cells.

Other hypotheses for the tree of life present the Archaea as the ancestors to all other organisms. Sketch a phylogenetic tree that presents Bacteria and Eukarya as more closely related to each other than to Archaea, and that has Archaea as a sister group to Bacteria and Eukarya.

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Textbook Question

The traditional tree of life (shown above) presents the three domains as distinct, monophyletic lineages. However, other hypotheses propose different views on the relationships among the Archaea, Bacteria, and Eukarya. In particular, the two-domain hypothesis—or eocyte hypothesis—is emerging as a well-supported alternative to the three-domain hypothesis. The eocyte hypothesis, illustrated below, suggests that eukaryotes evolved from eocytes (also known as the Crenarchaeota—a major lineage of the Archaea). Resolving the relationships among these ancient lineages is difficult, but it has profound implications on our understanding of the origin of eukaryotic cells.

What other types of evidence or features might be used to ascertain whether the tree of life is best represented according to the three-domain or the eocyte hypothesis?

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