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Ch. 21 - Genomic Analysis
Klug - Concepts of Genetics  12th Edition
Klug12th EditionConcepts of Genetics ISBN: 9780135564776Not the one you use?Change textbook
Chapter 21, Problem 22c

Homology can be defined as the presence of common structures because of shared ancestry. Homology can involve genes, proteins, or anatomical structures. As a result of 'descent with modification,' many homologous structures have adapted different purposes.
Under what circumstances might one expect proteins of similar function to not share homology? Would you expect such proteins to be homologous at the level of DNA sequences?

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Understand the concept of homology: Homology refers to the similarity in structures, genes, or proteins due to shared ancestry. Proteins that are homologous typically share a common evolutionary origin, even if their functions have diverged over time.
Consider the circumstances where proteins of similar function might not share homology: Proteins can evolve independently to perform similar functions through a process called convergent evolution. In this case, the proteins are analogous (similar in function) but not homologous (not derived from a common ancestor).
Analyze the relationship at the DNA level: If proteins are not homologous, their corresponding DNA sequences are unlikely to be homologous either. This is because the lack of shared ancestry at the protein level typically extends to the genetic level.
Explore examples of convergent evolution: For instance, enzymes like serine proteases in different organisms may perform similar functions but arise from distinct evolutionary pathways, resulting in non-homologous proteins.
Conclude the distinction between homology and analogy: Homology implies shared ancestry, while analogy implies functional similarity without shared ancestry. Proteins of similar function that do not share homology are examples of analogy, and their DNA sequences are unlikely to show homology either.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Homology

Homology refers to the similarity in structures or sequences that arises from a common ancestor. In genetics, this can pertain to genes, proteins, or anatomical features that have evolved from a shared lineage. Understanding homology is crucial for studying evolutionary relationships and functional similarities among different organisms.
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Convergent Evolution

Convergent evolution occurs when unrelated species develop similar traits or functions due to similar environmental pressures, rather than shared ancestry. This can lead to proteins that perform similar functions but do not share homologous sequences, as they evolved independently. Recognizing this concept helps explain why functional similarities do not always indicate genetic relatedness.
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Molecular Evolution

Molecular evolution examines the processes that drive changes in genetic material over time, including mutations, gene duplications, and horizontal gene transfer. These processes can result in proteins that perform similar functions but have diverged significantly at the DNA sequence level. Understanding molecular evolution is essential for interpreting the relationships between protein function and genetic similarity.
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Related Practice
Textbook Question

Researchers have compared candidate loci in humans and rats in search of loci in the human genome that are likely to contribute to the constellation of factors leading to hypertension [Stoll, M., et al. (2000). Genome Res. 10:473–482]. Through this research, they identified 26 chromosomal regions that they consider likely to contain hypertension genes. How can comparative genomics aid in the identification of genes responsible for such a complex human disease? The researchers state that comparisons of rat and human candidate loci to those in the mouse may help validate their studies. Why might this be so?

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Textbook Question

Homology can be defined as the presence of common structures because of shared ancestry. Homology can involve genes, proteins, or anatomical structures. As a result of 'descent with modification,' many homologous structures have adapted different purposes.

List three anatomical structures in vertebrates that are homologous but have different functions.

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Textbook Question

Homology can be defined as the presence of common structures because of shared ancestry. Homology can involve genes, proteins, or anatomical structures. As a result of 'descent with modification,' many homologous structures have adapted different purposes.

Is it likely that homologous proteins from different species have the same or similar functions? Explain.

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Textbook Question

Comparisons between human and chimpanzee genomes indicate that a gene that may function as a wild-type or normal gene in one primate may function as a disease-causing gene in another [The Chimpanzee Sequencing and Analysis Consortium (2005). Nature 437:69–87]. For instance, the PPARG locus (regulator of adipocyte differentiation) is a wild-type allele in chimps but is clearly associated with Type 2 diabetes in humans. What factors might cause this apparent contradiction? Would you consider such apparent contradictions to be rare or common? What impact might such findings have on the use of comparative genomics to identify and design therapies for disease-causing genes in humans?

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Textbook Question

Genomic sequencing has opened the door to numerous studies that help us understand the evolutionary forces shaping the genetic makeup of organisms. Using databases containing the sequences of 25 genomes, scientists examined the relationship between GC content and global amino acid composition [Kreil, D. P., and Ouzounis, C. A. (2001) Nucl. Acids Res. 29:1608–1615]. They found that it is possible to identify thermophilic species on the basis of their amino acid composition alone, which suggests that evolution in a hot environment selects for a certain whole organism amino acid composition. In what way might evolution in extreme environments influence genome and amino acid composition? How might evolution in extreme environments influence the interpretation of genome sequence data?

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Textbook Question

Whole-exome sequencing (WES) is helping physicians diagnose a genetic condition that has defied diagnosis by traditional means. The implication here is that exons in the nuclear genome are sequenced in the hopes that, by comparison with the genomes of nonaffected individuals, a diagnosis might be revealed.

What are the strengths and weaknesses of this approach?

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