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Ch. 16 - Genomics: Genetics from a Whole-Genome Perspective
Sanders - Genetic Analysis: An Integrated Approach 3rd Edition
Sanders3rd EditionGenetic Analysis: An Integrated ApproachISBN: 9780135564172Not the one you use?Change textbook
Chapter 16, Problem 23

In the globin gene family (shown in the below diagram), which pair of genes would exhibit a higher level of sequence similarity, the human δ-globin and human β-globin genes or the human β-globin and chimpanzee β-globin genes? Can you explain your answer in terms of the timing of gene duplications?
Diagram comparing human and chimpanzee β-globin gene clusters, illustrating gene duplications and relationships.

Verified step by step guidance
1
Understand the globin gene family: The globin gene family consists of genes that encode globin proteins, which are part of hemoglobin. These genes have evolved through gene duplication events, followed by divergence over time.
Identify the gene pairs in question: The problem compares the sequence similarity between (1) human δ-globin and human β-globin genes, and (2) human β-globin and chimpanzee β-globin genes.
Consider the evolutionary timeline: Gene duplications, such as the one that produced δ-globin and β-globin, occurred earlier in evolutionary history. This means that these genes have had more time to accumulate mutations and diverge in sequence.
Compare species divergence: The human β-globin and chimpanzee β-globin genes are orthologous genes, meaning they are derived from a common ancestor and have diverged only since the human-chimpanzee lineage split. This divergence is more recent compared to the duplication event that created δ-globin and β-globin.
Conclude based on timing: Since the human β-globin and chimpanzee β-globin genes have had less time to diverge compared to the human δ-globin and human β-globin genes, the former pair would exhibit a higher level of sequence similarity. This is due to the more recent common ancestry of the orthologous genes.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Gene Duplication

Gene duplication is a process where a segment of DNA is copied, resulting in two identical or similar genes. This can lead to genetic redundancy, allowing one gene to maintain its original function while the other may evolve new functions. Understanding the timing of these duplications is crucial for analyzing genetic similarities, as genes that diverged more recently are likely to show higher sequence similarity.
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Sequence Similarity

Sequence similarity refers to the degree to which two DNA, RNA, or protein sequences resemble each other. It is often measured using various algorithms that assess the alignment of sequences. Higher sequence similarity typically indicates a more recent common ancestor or shared evolutionary history, which is essential for comparing genes from different species or within a gene family.
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Phylogenetic Relationships

Phylogenetic relationships describe the evolutionary connections between different species or genes based on their genetic information. By constructing phylogenetic trees, scientists can visualize how closely related different genes or organisms are, which helps in understanding the timing of gene duplications and the evolutionary history of gene families, such as the globin gene family.
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Related Practice
Textbook Question

A modification of the two-hybrid system, called the one-hybrid system, is used for identifying proteins that can bind specific DNA sequences. In this method, the DNA sequence to be tested, the bait, is fused to a TATA box to drive expression of a reporter gene. The reporter gene is often chosen to complement a mutant phenotype; for example, a HIS gene may be used in a his⁻ mutant yeast strain. A cDNA library is constructed with the cDNA sequences translationally fused to the GAL4 activation domain and transformed into this yeast strain. Diagram how trans-acting proteins that bind to cis-acting regulatory sequences can be identified using a one-hybrid screen.

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Textbook Question

A substantial fraction of almost every genome sequenced consists of genes that have no known function and that do not have sequence similarity to any genes with known function. Describe two approaches to ascertaining the biological role of these genes in S. cerevisiae.

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Textbook Question

A substantial fraction of almost every genome sequenced consists of genes that have no known function and that do not have sequence similarity to any genes with known function. How would your approach change if the genes of unknown function were in the human genome?

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Textbook Question

You are studying similarities and differences in how organisms respond to high salt concentrations and high temperatures. You begin your investigation by using microarrays to compare gene expression patterns of S. cerevisiae in normal growth conditions, in high salt concentrations, and at high temperatures. The results are shown here, with the values of red and green representing the extent of increase and decrease, respectively, of expression for genes a–s in the experimental conditions versus the control (normal growth) conditions. What is the first step you will take to analyze your data?

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Textbook Question
In conducting the study described in Problem 24, you have noted that a set of S. cerevisiae genes are repressed when yeast are grown under high-salt conditions.How might you determine whether this set of genes is regulated by a common transcription factor?
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Textbook Question

In conducting the study described in Problem 24, you have noted that a set of S. cerevisiae genes are repressed when yeast are grown under high-salt conditions. How might you approach this question if genome sequences for the related Saccharomyces species S. paradoxus, S. mikatae, and S. bayanus were also available?

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