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Ch. 8 - Molecular Biology of Transcription and RNA Processing
Sanders - Genetic Analysis: An Integrated Approach 3rd Edition
Sanders3rd EditionGenetic Analysis: An Integrated ApproachISBN: 9780135564172Not the one you use?Change textbook
Chapter 8, Problem 24a

A full-length eukaryotic gene is inserted into a bacterial chromosome. The gene contains a complete promoter sequence and a functional polyadenylation sequence, and it has wild-type nucleotides throughout the transcribed region. However, the gene fails to produce a functional protein. List at least three possible reasons why this eukaryotic gene is not expressed in bacteria.

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Eukaryotic genes contain introns, which are non-coding sequences that must be removed during RNA processing. Bacteria lack the splicing machinery required to remove introns, so the mRNA transcribed from the eukaryotic gene would not be properly processed, leading to a non-functional or untranslated mRNA.
Eukaryotic promoters are recognized by eukaryotic RNA polymerase and associated transcription factors. Bacteria use a different set of transcription machinery, including sigma factors, which may not recognize the eukaryotic promoter sequence. As a result, transcription of the gene may not occur.
Eukaryotic genes often rely on specific post-transcriptional modifications, such as the addition of a 5' cap and a poly-A tail, for mRNA stability and translation. Bacteria do not perform these modifications, which could lead to rapid degradation of the mRNA or failure to initiate translation.
The ribosome binding site in bacteria (Shine-Dalgarno sequence) is different from the mechanisms used by eukaryotic ribosomes to initiate translation. If the eukaryotic gene lacks a Shine-Dalgarno sequence, bacterial ribosomes may not be able to bind and initiate translation effectively.
Eukaryotic proteins often require post-translational modifications, such as glycosylation or phosphorylation, to become functional. Bacteria lack the machinery to perform these modifications, so even if the protein is produced, it may not be functional.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Promoter Compatibility

Eukaryotic promoters often contain specific sequences and regulatory elements that are recognized by eukaryotic transcription factors. Bacteria have different promoter structures and require their own sigma factors for transcription initiation. If the eukaryotic promoter is not compatible with bacterial transcription machinery, the gene may not be expressed.
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Post-Transcriptional Modifications

Eukaryotic genes undergo several post-transcriptional modifications, including capping, splicing, and polyadenylation, which are essential for mRNA stability and translation. Bacteria do not perform these modifications, so if the eukaryotic mRNA is not properly processed, it may be degraded or not translated into a functional protein.
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Codon Usage Bias

Different organisms have varying preferences for specific codons when encoding amino acids, known as codon usage bias. Eukaryotic genes may contain codons that are rarely used in bacteria, leading to inefficient translation or failure to produce the protein. This mismatch can hinder the overall expression of the eukaryotic gene in a bacterial system.
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Related Practice
Textbook Question

The human β-globin wild-type allele and a certain mutant allele are identical in sequence except for a single base-pair substitution that changes one nucleotide at the end of intron 2. The wild-type and mutant sequences of the affected portion of pre-mRNA are

Speculate about the way in which this base substitution causes mutation of β-globin protein.

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Textbook Question

The human β-globin wild-type allele and a certain mutant allele are identical in sequence except for a single base-pair substitution that changes one nucleotide at the end of intron 2. The wild-type and mutant sequences of the affected portion of pre-mRNA are

This is one example of how DNA sequence change occurring somewhere other than in an exon can produce mutation. List other kinds of DNA sequence changes occurring outside exons that can produce mutation. In each case, characterize the kind of change you would expect to see in mutant mRNA or mutant protein.

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Textbook Question

Microbiologists describe the processes of transcription and translation as 'coupled' in bacteria. This term indicates that a bacterial mRNA can be undergoing transcription at the same moment it is also undergoing translation.

How is coupling of transcription and translation possible in bacteria?

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Textbook Question

A full-length eukaryotic gene is inserted into a bacterial chromosome. The gene contains a complete promoter sequence and a functional polyadenylation sequence, and it has wild-type nucleotides throughout the transcribed region. However, the gene fails to produce a functional protein. What changes would you recommend to permit expression of this eukaryotic gene in a bacterial cell?

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Textbook Question

The accompanying illustration shows a portion of a gene undergoing transcription. The template and coding strands for the gene are labeled, and a segment of DNA sequence is given.

For this gene segment, superimpose a drawing of RNA polymerase as it nears the end of transcription of the DNA sequence.

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Textbook Question

The accompanying illustration shows a portion of a gene undergoing transcription. The template and coding strands for the gene are labeled, and a segment of DNA sequence is given.

For this gene segment indicate the direction in which RNA polymerase moves as it transcribes this gene.

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