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Ch. 14 - Analysis of Gene Function via Forward Genetics and Reverse Genetics
Sanders - Genetic Analysis: An Integrated Approach 3rd Edition
Sanders3rd EditionGenetic Analysis: An Integrated ApproachISBN: 9780135564172Not the one you use?Change textbook
Chapter 14, Problem 26a

In land plants, there is an alternation of generations between a haploid gametophyte generation and a diploid sporophytic generation. Both generations are typically multicellular and may be free-living. The male (pollen) and female (embryo sac) gametophytes are the haploid generation of flowering plants.
How would you conduct a screen to identify genes required for female gametophyte development in Arabidopsis?

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Understand the biological context: Female gametophyte development in Arabidopsis involves the formation of the embryo sac, which is a haploid structure derived from meiosis of the megaspore mother cell. Genes involved in this process are critical for proper development and function of the gametophyte.
Design a genetic screen: Use mutagenesis (e.g., chemical mutagens like EMS or insertional mutagenesis using T-DNA) to induce random mutations in Arabidopsis seeds. Grow the plants to maturity to allow the mutations to be expressed in the next generation.
Identify mutants with defective female gametophyte development: Screen for plants that exhibit abnormalities in seed development, reduced fertility, or defects in embryo sac formation. This can be done by observing ovules under a microscope to check for structural or developmental abnormalities.
Confirm the genetic basis of the phenotype: Perform genetic crosses to determine if the observed defects are heritable and linked to a single gene. For example, cross the mutant plants with wild-type plants and analyze the segregation patterns in the progeny.
Map and identify the gene: Use molecular techniques such as positional cloning or whole-genome sequencing to identify the specific gene responsible for the mutant phenotype. Once identified, validate the gene's role in female gametophyte development by complementing the mutant with a wild-type copy of the gene or using gene-editing techniques like CRISPR to recreate the mutation.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Alternation of Generations

Alternation of generations is a reproductive cycle in land plants that involves two distinct multicellular stages: the haploid gametophyte and the diploid sporophyte. The gametophyte produces gametes through mitosis, while the sporophyte produces spores through meiosis. Understanding this cycle is crucial for identifying the genetic mechanisms that govern the development of each generation, particularly the female gametophyte in flowering plants.
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Gametophyte Development

Gametophyte development refers to the processes by which haploid structures, such as pollen and embryo sacs, form and mature in plants. In Arabidopsis, the female gametophyte develops within the ovule and undergoes several stages, including megasporogenesis and megagametogenesis. Identifying genes involved in this development can provide insights into the genetic regulation of reproductive processes in flowering plants.
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Genetic Screening Techniques

Genetic screening techniques, such as mutagenesis, gene knockout, and transgenic approaches, are essential for identifying specific genes involved in biological processes. In the context of Arabidopsis, researchers can use these techniques to create mutants or analyze gene expression patterns during female gametophyte development. This allows for the identification of key genes that influence the formation and function of the female gametophyte.
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Related Practice
Textbook Question

Mutations in the CFTR gene result in cystic fibrosis in humans, a condition in which abnormal secretions are present in the lungs, pancreas, and sweat glands. The gene was mapped to a 500-kb region on chromosome 7 containing three candidate genes.

How would you prove that your chosen candidate is the CFTR gene?

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Textbook Question

How would you clone a gene that you have identified by a mutant phenotype in Drosophila?

745
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Textbook Question

How would you conduct a screen to identify recessive mutations in Drosophila that result in embryo lethality? How would you propagate the recessive mutant alleles?

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Textbook Question

In land plants, there is an alternation of generations between a haploid gametophyte generation and a diploid sporophytic generation. Both generations are typically multicellular and may be free-living. The male (pollen) and female (embryo sac) gametophytes are the haploid generation of flowering plants.

How would you conduct a screen to identify genes required for male gametophyte development?

499
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Textbook Question

Most organisms display a circadian rhythm, a cycling of biological processes that is roughly synchronized with day length (e.g., jet lag occurs in humans when rapid movement between time zones causes established circadian rhythms to be out of synch with daylight hours). In Drosophila, pupae eclose (emerge as adults after metamorphosis) at dawn.

Using this knowledge, how would you screen for Drosophila mutants that have an impaired circadian rhythm?

623
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Textbook Question

Most organisms display a circadian rhythm, a cycling of biological processes that is roughly synchronized with day length (e.g., jet lag occurs in humans when rapid movement between time zones causes established circadian rhythms to be out of synch with daylight hours). In Drosophila, pupae eclose (emerge as adults after metamorphosis) at dawn.

In most plants, such as Arabidopsis, genes whose encoded products have roles related to photosynthesis have expression patterns that vary in a circadian manner. Using this knowledge, how would you screen for Arabidopsis mutants that have an impaired circadian rhythm?

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