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Ch. 5 - Genetic Linkage and Mapping in Eukaryotes
Sanders - Genetic Analysis: An Integrated Approach 3rd Edition
Sanders3rd EditionGenetic Analysis: An Integrated ApproachISBN: 9780135564172Not the one you use?Change textbook
Chapter 5, Problem 22

T. H. Morgan's data on eye color and wing form genetic linkage between the two genes. Test the genetic linkage (shown in the figure below) data with chi-square analysis, and show that the results are significantly different from the expectation under the assumption of independent assortment.
Diagram showing fruit fly crosses and chi-square analysis of eye color and wing form genes, illustrating genetic linkage.

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Step 1: Understand the hypothesis and data. The null hypothesis assumes that the two genes (eye color and wing form) assort independently, meaning the observed phenotypic ratios should follow Mendel's independent assortment. The alternative hypothesis is that the genes are linked, so the observed ratios will deviate from expected independent assortment ratios.
Step 2: Determine the expected phenotypic ratios under independent assortment. For two genes with two alleles each, the expected phenotypic ratio is typically 9:3:3:1 for a dihybrid cross, or 1:1:1:1 for a test cross, depending on the experimental design. Identify which ratio applies based on Morgan's experimental setup.
Step 3: Calculate the expected number of offspring for each phenotypic class by multiplying the total number of offspring by the expected proportion for each class under independent assortment.
Step 4: Use the chi-square formula χ^2=in(Oi-Ei)2Ei, where Oi is the observed count and Ei is the expected count for each phenotypic class. Calculate this value by summing over all classes.
Step 5: Determine the degrees of freedom, which is the number of phenotypic classes minus 1, and compare the calculated chi-square value to the critical value from the chi-square distribution table at an appropriate significance level (usually 0.05). If the calculated value exceeds the critical value, reject the null hypothesis, indicating significant genetic linkage.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Genetic Linkage

Genetic linkage occurs when two genes are located close together on the same chromosome and tend to be inherited together, rather than assorting independently. This linkage affects the expected ratios of offspring phenotypes, deviating from Mendel’s law of independent assortment.
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Chi Square and Linkage

Chi-Square Test for Independence

The chi-square test is a statistical method used to compare observed data with expected data under a specific hypothesis, such as independent assortment. It calculates a value that helps determine if deviations from expected ratios are due to chance or indicate a significant difference.
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Chi Square Analysis

Mendelian Independent Assortment

Mendel’s law of independent assortment states that alleles of different genes segregate independently during gamete formation, leading to predictable phenotypic ratios. Testing this assumption helps identify whether genes are linked or assort independently.
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Gamete Genetics and Independent Assortment
Related Practice
Textbook Question

Gene R and gene T are genetically linked. Answer the following questions concerning a dihybrid organism with the genotype Rt/rT:


If r = 0.20, give the expected frequencies of gametes produced by the dihybrid.

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Textbook Question

Gene R and gene T are genetically linked. Answer the following questions concerning a dihybrid organism with the genotype Rt/rT:


If two crossover events occur between these two genes, what are the genotypes of the recombinant chromosomes?

448
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Textbook Question

Gene R and gene T are genetically linked. Answer the following questions concerning a dihybrid organism with the genotype Rt/rT:


Can you make a general statement about how the occurrence of two crossover events between a given pair of linked genes affects the estimate of recombination frequency?

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Textbook Question

A wild-type trihybrid soybean plant is crossed to a pure-breeding soybean plant with the recessive phenotypes pale leaf (l), oval seed (r), and short height (t). The results of the three-point test cross are shown below. Traits not listed are wild type.

What are the alleles on each homologous chromosome of the parental wild-type trihybrid soybean plant? Place the alleles in their correct gene order. Use L, R, and T to represent dominant alleles and l, r, and t for recessive alleles.

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Textbook Question

A wild-type trihybrid soybean plant is crossed to a pure-breeding soybean plant with the recessive phenotypes pale leaf (l), oval seed (r), and short height (t). The results of the three-point test cross are shown below. Traits not listed are wild type.

Calculate the recombination frequencies between the adjacent genes.

446
views
Textbook Question

A wild-type trihybrid soybean plant is crossed to a pure-breeding soybean plant with the recessive phenotypes pale leaf (l), oval seed (r), and short height (t). The results of the three-point test cross are shown below. Traits not listed are wild type.

Calculate the interference value for these data.

486
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