20. Quantitative Genetics

In 1988, Horst Wilkens investigated blind cavefish, comparing them with members of a sibling species with normal vision that are found in a lake [Wilkens, H. (1988). Evol. Biol. 25:271–367]. We will call them cavefish and lakefish. Wilkens found that cavefish eyes are about seven times smaller than lakefish eyes. F₁ hybrids have eyes of intermediate size. These data, as well as the F₁ × F₁ cross and those from backcrosses (F₁ × cavefish and F₁ × lakefish), are depicted below. Examine Wilkens's results and respond to the following questions:

Wilkens examined about 1000 F₂ progeny and estimated that 6–7 genes are involved in determining eye size. Is the sample size adequate to justify this conclusion? Propose an experimental protocol to test the hypothesis.

Both QTL mapping and association (GWA) mapping are used to locate genes responsible for a phenotype. Which of the two techniques does NOT require crosses to produce a mapping population

Both QTL mapping and association mapping are used to locate genes responsible for a phenotype. Which of the following typically tests two differing alleles between the parents of a mapping population?

True or False:Association (GWA) mapping definitively proves that the gene identified is responsible for the trait variation or phenotype?

What is a quantitative trait locus (QTL)? Suppose you wanted to search for QTLs influencing fruit size in tomatoes. Describe the general structure of a QTL experiment, including the kind of tomato strains you would use, how molecular markers should be distributed in the genome, how the genetic marker alleles should differ between the two strains, and how you would use the F₁ progeny in a subsequent cross to obtain information about the possible location(s) of QTLs of interest.

An association of racehorse owners is seeking a new genetic strategy to improve the running speed of their horses. Traditional breeding of fast male and female horses has proven expensive and time-consuming, and the breeders are interested in an approach using quantitative trait loci as a basis for selecting breeding pairs of horses. Write a brief synopsis (∼50 words) of QTL mapping to explain how genes influencing running speed might be identified in horses.

Many traits of economic or medical significance are determined by quantitative trait loci (QTLs) in which many genes, usually scattered throughout the genome, contribute to expression.

What is meant by the term cosegregate in the context of QTL mapping? Why are markers such as RFLPs, SNPs, and microsatellites often used in QTL mapping?

Many traits of economic or medical significance are determined by quantitative trait loci (QTLs) in which many genes, usually scattered throughout the genome, contribute to expression.

What general procedures are used to identify such loci?

A 3-inch plant was crossed with a 15-inch plant, and all F₁ plants were 9 inches. The F₂ plants exhibited a 'normal distribution,' with heights of 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, and 15 inches.

What will be the outcome if the F₁ plants are testcrossed with plants that are homozygous for all nonadditive alleles?

Type A1B brachydactyly (short middle phalanges) is a genetically determined trait that maps to the short arm of chromosome 5 in humans. If you classify individuals as either having or not having brachydactyly, the trait appears to follow a single-locus, incompletely dominant pattern of inheritance. However, if one examines the fingers and toes of affected individuals, one sees a range of expression from extremely short to only slightly short. What might cause such variation in the expression of brachydactyly?

In a series of crosses between two true-breeding strains of peaches, the F₁ generation was uniform, producing 30-g peaches. The F₂ fruit mass ranges from 38 to 22 g at intervals of 2 g.

Using gene symbols of your choice, give the genotypes of the parents and the F₂.

In a series of crosses between two true-breeding strains of peaches, the F₁ generation was uniform, producing 30-g peaches. The F₂ fruit mass ranges from 38 to 22 g at intervals of 2 g.

Using these data, determine the number of polygenic loci involved in the inheritance of peach mass.

In 1988, Horst Wilkens investigated blind cavefish, comparing them with members of a sibling species with normal vision that are found in a lake [Wilkens, H. (1988). Evol. Biol. 25:271–367]. We will call them cavefish and lakefish. Wilkens found that cavefish eyes are about seven times smaller than lakefish eyes. F₁ hybrids have eyes of intermediate size. These data, as well as the F₁ × F₁ cross and those from backcrosses (F₁ × cavefish and F₁ × lakefish), are depicted below. Examine Wilkens's results and respond to the following questions:

A comparison of the embryonic eye in cavefish and lakefish revealed that both reach approximately 4 mm in diameter. However, lakefish eyes continue to grow, while cavefish eye size is greatly reduced. Speculate on the role of the genes involved in this problem.

In 1988, Horst Wilkens investigated blind cavefish, comparing them with members of a sibling species with normal vision that are found in a lake [Wilkens, H. (1988). Evol. Biol. 25:271–367]. We will call them cavefish and lakefish. Wilkens found that cavefish eyes are about seven times smaller than lakefish eyes. F₁ hybrids have eyes of intermediate size. These data, as well as the F₁×F₁ cross and those from backcrosses (F₁×cavefish and F₁×lakefish), are depicted below. Examine Wilkens's results and respond to the following questions:

Based on the results of the F₁ backcross with cavefish, is your explanation supported? Explain. 

In 1988, Horst Wilkens investigated blind cavefish, comparing them with members of a sibling species with normal vision that are found in a lake [Wilkens, H. (1988). Evol. Biol. 25:271–367]. We will call them cavefish and lakefish. Wilkens found that cavefish eyes are about seven times smaller than lakefish eyes. F₁ hybrids have eyes of intermediate size. These data, as well as the F₁×F₁ cross and those from backcrosses (F₁×cavefish and F₁×lakefish), are depicted below. Examine Wilkens's results and respond to the following questions:

Based on the results of the F₁ backcross with lakefish, is your explanation supported? Explain.